Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30209g00067 ATGCAGCAAGATCAGCTCAAGAAGGATATGAAAGAGTTGGACTTCTTCACTGACTATGGGGATGCCAACAGATACAAGATTCTTGAAGTTATAGGGAAGGGTAGCTATGGAGTTGTTTGTGCAGCAATTGACACACATACTGGGGGAAAAGTTGCCATAAAGAAGATTCATGATGTTTTTGAGCATATATCCGATGCCATCAGAATCCTCCGCGAGGTCAAGTTGCTAAGACTTTTAAGACACCCTGATATTGTTGATATTAAGCGGATTATGTTGCCACCTTCAAAGAGAGATTTCAAAGATATTTATGTGGTCTTTGAGCTCATGGAGTCTGATCTCCATCAAGTCATCAAAGCTAATGATGACTTGACCCGCGAACACCACCAGTTTTTCCTTTATCAGATGCTACGTGCTTTGAAGTATATGCATACAGCCAATGTGTATCACAGAGATCTTAAGCCCAAGAATATACTGGCTAATGCTAACTGCAAGCTCAAAATTTGTGATTTTGGACTGGCCAGAGTTGCATTCAATGATGAACCAACTGCAATATTTTGGACGGATTATGTTGCTACTAGATGGTACAGAGCCCCTGAGCTGTGTGGATCATTCGCATCTAAGTATACACCAGCGATTGATATATGGGGCATAGGATGCATTTTTGCTGAGGTGCTAACAGGAAAACCGTTGTTCCCTGGCAAAAGTGTTGTGCATCAATTAGATTTGATTACTGNNNNNNNNNNGCCCGAAGTTATTGCAGGAGTTCGGAATGAGAAGGCAAGGAAGTACCTAACGGAAATGCGGAAGAAACCTCCTGTGCCATTTGAAAAGAAATTTCCGAATGCTGATCCATTGGCACTTCGCCTACTGCAAAGGCTTTTAGCATTTGATCCTAAGGAGCGGCCAACTGCTCAAGAGGCACTAGCTGATCCTTTCTTCAAGGGTTTGGCCAAAGTTGAGAGAGAGCCTTCTTGTCAGCCAATTTCAAAATTGGAATTTGAATTTGAGAGGAGAAGATTGAATAGGGAGGACGTTAGAGAACTACTATATCGTGAGATTCTGGAATATCATCCTCAGCTTCTCAAAGATTACATGAGTGGAATGGAAGGGACAAACTTCGTCTATCCAAGTGCCATAGATCATTTGAGAAAGCAATTTGCTTATCTTGAGGAAAATCATGGTAAAAGTGGCCCAGTGATTCCTCCGGAGAGGAAGCATGTTTCTCTTCCTAGGTCGACGGTACATTCTAGTACAATTACTCCCAGTGCCCAGCCATCAATTCCTCCAAATGAGAACAAGCAAATTGCAGAAGATGCATCCAAGATTTCGAGAGCTACCGGAGAATCTAATTCAACCAGTCATATAGTAAGGCCTTCAAGACCTCCACCAAAGGTTCCAACAGGTATAAGTTCTATCTATAACGGTTCTCACCTTAGTTATATTTTGTAA 1449 0.4168 MQQDQLKKDMKELDFFTDYGDANRYKILEVIGKGSYGVVCAAIDTHTGGKVAIKKIHDVFEHISDAIRILREVKLLRLLRHPDIVDIKRIMLPPSKRDFKDIYVVFELMESDLHQVIKANDDLTREHHQFFLYQMLRALKYMHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDEPTAIFWTDYVATRWYRAPELCGSFASKYTPAIDIWGIGCIFAEVLTGKPLFPGKSVVHQLDLITXXXXPEVIAGVRNEKARKYLTEMRKKPPVPFEKKFPNADPLALRLLQRLLAFDPKERPTAQEALADPFFKGLAKVEREPSCQPISKLEFEFERRRLNREDVRELLYREILEYHPQLLKDYMSGMEGTNFVYPSAIDHLRKQFAYLEENHGKSGPVIPPERKHVSLPRSTVHSSTITPSAQPSIPPNENKQIAEDASKISRATGESNSTSHIVRPSRPPPKVPTGISSIYNGSHLSYIL 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30209g00067 482 MobiDBLite consensus disorder prediction 443 457 - -
Stsc30209g00067 482 SUPERFAMILY Protein kinase-like (PK-like) 20 317 IPR011009 -
Stsc30209g00067 482 Pfam Protein kinase domain 25 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30209g00067 482 CDD STKc_TDY_MAPK 24 358 - -
Stsc30209g00067 482 FunFam Mitogen-activated protein kinase 111 336 - -
Stsc30209g00067 482 FunFam Mitogen-activated protein kinase 15 119 - -
Stsc30209g00067 482 MobiDBLite consensus disorder prediction 411 433 - -
Stsc30209g00067 482 ProSiteProfiles Protein kinase domain profile. 25 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30209g00067 482 Gene3D Transferase(Phosphotransferase) domain 1 111 336 - -
Stsc30209g00067 482 SMART serkin_6 25 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30209g00067 482 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 24 344 - -
Stsc30209g00067 482 MobiDBLite consensus disorder prediction 393 470 - -
Stsc30209g00067 482 Gene3D Phosphorylase Kinase; domain 1 40 359 - -
Stsc30209g00067 482 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Stsc30209g00067 482 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30209g00067 Stsc-Chr30209 486345 490870 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30209g00067 1 466 MAP Kinase Gene Family AT1G53510 77.447 0.0 746
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Stsc30209g00067 Pkinase 2.6e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30209g00067 - - gmx:100800878 803.897