Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30209g00059 ATGGAGGACGAGTCCAGCGAGAATCGGAAACAAGCGAGACTCGTGATTCTAGAGCTCGCAAACATGATAAGCGTTCCCATGGCGCTGAACGCCGTCGTACGCCTCAACGTCGCCGATGCTATTTGGCAGGGCGGCGCCAATAACCCCCTTTCTGCCATCGAGATCCTGACTCGAGTCCTCCCCGACGGCAACGGCGACGCCGAGAACCTCCAGCGCTTGCTCCGCTTGCTAGCCAGCTACAGCGTCTTCAACGAGCATTCTCCTTCCGGCGGCGGCGAACGAGAGAGGAAGTACTCGCTAACAGACGTAGGCAAAACGCTGGTGACGGATAAGGAAGGGTTATCTTTTGCGCCGTTCGTACTTCAGCACCACCAGGATGCGTTGATGAAAGCATGGCCGTTGGTGCATGAGGCAGTGGTTGATCCTTCAAAGGAGCCCTTCGAGAGAGCCAATGGGGAGCCAGCATACAGTTACTACCTTAAACAAGGGAATATGAATGAGCTCATGGTCAAGGCCATGTCTGGGGTCTCTGTGCCTTTCATGAGGGCCATGCTCCAGGCCTACGACGGCTTCCGTGGAGTTCAGAGGCTTGTGGATGTCGGTGGCAGCGGCGGGGACTGCCTCCGGATGATTCTCCAGAAACATCCCAACATTAAAGAAGGCATCAACTTTGACCTGCCTGAAGTGCTGGCCAAAGCACCACAAATTCCAGGTGTAACCCATGTGGGTGGTGACATGTTCAAATCTATTCCTCAAGCTGATGCGATCTTCATGAAGTGGGTGCTTACAACATGGACAGATGATGAGATCAAGACGATAATGCAAAACTGCTACAACTCACTCTCAGAAGGAGGGAAGCTCATTGCATGCGAGCCGTTGCTGCCGGAGAACTCGGACAACAGCCACAGAACGAGGGCGTTGCTTGAAGGCGACATATTCGTCATGACAATATACAGAGCCAAAGGGAAGCACAGGACTGAAGAACAGTTCAGGAAGCTTGCATTTTCTGTAGGCTTCCCTAGTTTCCGGGCATTTCATGTTGATCACTTCAGCACAGTGCTCGAGTTTCAGAAATGA 1077 0.5292 MEDESSENRKQARLVILELANMISVPMALNAVVRLNVADAIWQGGANNPLSAIEILTRVLPDGNGDAENLQRLLRLLASYSVFNEHSPSGGGERERKYSLTDVGKTLVTDKEGLSFAPFVLQHHQDALMKAWPLVHEAVVDPSKEPFERANGEPAYSYYLKQGNMNELMVKAMSGVSVPFMRAMLQAYDGFRGVQRLVDVGGSGGDCLRMILQKHPNIKEGINFDLPEVLAKAPQIPGVTHVGGDMFKSIPQADAIFMKWVLTTWTDDEIKTIMQNCYNSLSEGGKLIACEPLLPENSDNSHRTRALLEGDIFVMTIYRAKGKHRTEEQFRKLAFSVGFPSFRAFHVDHFSTVLEFQK 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30209g00059 358 SUPERFAMILY "Winged helix" DNA-binding domain 8 110 IPR036390 -
Stsc30209g00059 358 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 113 355 IPR029063 -
Stsc30209g00059 358 FunFam Caffeic acid 3-O-methyltransferase 113 358 - -
Stsc30209g00059 358 PIRSF O-mtase 1 358 IPR016461 GO:0008168
Stsc30209g00059 358 PANTHER O-METHYLTRANSFERASE 19 342 IPR016461 GO:0008168
Stsc30209g00059 358 Gene3D - 1 112 IPR036388 -
Stsc30209g00059 358 Gene3D Vaccinia Virus protein VP39 113 358 IPR029063 -
Stsc30209g00059 358 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 17 358 IPR016461 GO:0008168
Stsc30209g00059 358 Pfam O-methyltransferase domain 136 339 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30209g00059 Stsc-Chr30209 445402 448165 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30209g00059 1 358 Monolignol Biosynthesis Gene Families AT3G53140 71.823 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30209g00059 - - gmx:100784957 600.127