Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30209g00055 ATGGAAGATGAGTCCAGCGAGAATCGGAAGCAAGCGAGGCTAGCGATTCTTGAGCTCGCAAACATGATAAGCGTTCCAATGGCGCTGAACGCCGTCGTACGCCTCAACGTCGCGGACGCCATCTGGCAGGGAGGCGTCAATAGCCCCCTTTCCGCCATCGAGATCCTGACGCGAGTCCTCCCCAGCGGCAACGGCGACGCCGAGAACCTCCAACGCTTGCTCCGCTTGCTAGCCAGCTACGGCGTCTTCAACGAGCATTCTCCTTCGGGCGGCGGCGAAGGAGAGAGGAAGTACTCGCTAACCGACGTTGGCAAAACGCTGGTGACAGATAAGGAAGGGTTGTCTTTTGCGCCGTATGTACTTCAGCACCACCAGGATGCGTTAGTGAGAGCATGGCCGTTGGTGCATGAGGCAGTAGTTGATCCTTCAAAGGAGCCCTTCGAGAGAGCCAATGGGGAGCCAGCATACAGTTACTACCTTAAACAAGGGAATATGAATGAGCTCATGGTCAAGGCCATGTCTGGGGTCTCTGTGCCTTTCATGAGGGCCATGCTCCAGGCCTACGACGGCTTCCGTGGAGTTCAGAGGCTTGTGGATGTTGGTGGCAGCGGCGGCGACTGCCTCCGGATGATTCTCCAGAAATATCCCAATGTTAAGGAAGGCATCAACTTTGACCTGCCTGAAGTGGTGGCCAAAGCACCACAAATTCCAGGTGTAACCCATGTGGGCGGTGACATGTTCAAATCCATTCCTCAAGCTGATGCGATCTTCATGAAGTGGGTGCTTACAACATGGACAGACGATGAGATCAAGACGATAATGCAAAACTGCTACAACTCACTCCCAGAAGGAGGGAAGCTCATTGCATGCGAGCCGGTGCTGCCAGAGAACTCGGACGACAGCCACAGAACAAGAGCGTTGCTTGAAGGCGACATATTCGTCATGACAATATACAGAGCCAAAGGGAAGCACAGGACTGAAGAACAGTTCAGGAAGCTTGCAGTTTCTGTAGGCTTCCCTGGTTTCCGGGCATTCCATGTTGATCATTTCTACACCGTGCTCGAGTTTCAGAAGTGA 1077 0.5367 MEDESSENRKQARLAILELANMISVPMALNAVVRLNVADAIWQGGVNSPLSAIEILTRVLPSGNGDAENLQRLLRLLASYGVFNEHSPSGGGEGERKYSLTDVGKTLVTDKEGLSFAPYVLQHHQDALVRAWPLVHEAVVDPSKEPFERANGEPAYSYYLKQGNMNELMVKAMSGVSVPFMRAMLQAYDGFRGVQRLVDVGGSGGDCLRMILQKYPNVKEGINFDLPEVVAKAPQIPGVTHVGGDMFKSIPQADAIFMKWVLTTWTDDEIKTIMQNCYNSLPEGGKLIACEPVLPENSDDSHRTRALLEGDIFVMTIYRAKGKHRTEEQFRKLAVSVGFPGFRAFHVDHFYTVLEFQK 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30209g00055 358 SUPERFAMILY "Winged helix" DNA-binding domain 8 110 IPR036390 -
Stsc30209g00055 358 FunFam Caffeic acid 3-O-methyltransferase 113 358 - -
Stsc30209g00055 358 Pfam O-methyltransferase domain 136 339 IPR001077 GO:0008171
Stsc30209g00055 358 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 17 358 IPR016461 GO:0008168
Stsc30209g00055 358 Pfam Dimerisation domain 27 78 IPR012967 GO:0046983
Stsc30209g00055 358 PIRSF O-mtase 1 358 IPR016461 GO:0008168
Stsc30209g00055 358 PANTHER O-METHYLTRANSFERASE 19 345 IPR016461 GO:0008168
Stsc30209g00055 358 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 113 356 IPR029063 -
Stsc30209g00055 358 Gene3D - 1 111 IPR036388 -
Stsc30209g00055 358 Gene3D Vaccinia Virus protein VP39 112 358 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30209g00055 Stsc-Chr30209 414320 419707 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30209g00055 1 358 Monolignol Biosynthesis Gene Families AT3G53140 74.309 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30209g00055 - - gmx:100784957 610.527