Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30209g00033 ATGAAAGTGGTGAGTTACATTGCACAATGGAGAGGCATTGTAAAGGAAGCTATGAACCGAACAGCCATTGCTGTGAAGTTCCTCTGCTGCCTTCACATTACAGACAACTACTTCTGTTCCCCAGTTCATATTTATGGTCCTAGCATGCTCCCCACACTCAACATGGTAGGCGACATCGTTTTGGCTGAACACCTCTCTCAGAGGCTTGGGAAGGTTCGCCATGGCGACTTGGTTGTGGTTCGGTCCCCTTCGGACCCTAAAAAGTCCATCACCAAAAGGATTATGGGAATGGAAGGGGATACTGTCACTTACTTTGATCCTATGCTTGGTGATGCTACTCGTGTTGCTGTGGTGCCAAAGGGGCATGTTTGGATTCAAGGGGATAACATCTTTGCGTCCCTTGATTCACGGCATTTTGGCCCTGTTCCTTATGGCCTTATACAAGGAAAGGTGTTTTTCAGGGTTTGGCCACTTGATTGCATTGGAGTGCCGGGTCAATAA 501 0.477 MKVVSYIAQWRGIVKEAMNRTAIAVKFLCCLHITDNYFCSPVHIYGPSMLPTLNMVGDIVLAEHLSQRLGKVRHGDLVVVRSPSDPKKSITKRIMGMEGDTVTYFDPMLGDATRVAVVPKGHVWIQGDNIFASLDSRHFGPVPYGLIQGKVFFRVWPLDCIGVPGQ 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30209g00033 166 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 9 159 - -
Stsc30209g00033 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 37 53 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc30209g00033 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 90 102 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc30209g00033 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 118 137 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc30209g00033 166 FunFam Inner membrane protease subunit 1 35 163 - -
Stsc30209g00033 166 SUPERFAMILY LexA/Signal peptidase 37 162 IPR036286 -
Stsc30209g00033 166 Gene3D Umud Fragment, subunit A 35 162 - -
Stsc30209g00033 166 Pfam Signal peptidase, peptidase S26 113 156 IPR019533 GO:0004252|GO:0006465
Stsc30209g00033 166 Pfam Signal peptidase, peptidase S26 23 106 IPR019533 GO:0004252|GO:0006465
Stsc30209g00033 166 NCBIfam signal peptidase I 26 105 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc30209g00033 166 CDD S26_SPase_I 40 151 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30209g00033 Stsc-Chr30209 253996 256943 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30209g00033 49 162 MADS-box Gene Family AT1G29960 50.435 4.84e-37 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30209g00033 K09647 - cave:132173278 244.588