Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc301g00005 ATGAGTAATTGGTTGGGGTTTTCTCTTACTCCACACCTGAGGATTAATGAAGAATTTGAGAGACAAATTCATCAAGAGAATGGAAATGGAGGAGGAGGAAGAGGAACTTATCCTTCATCTTCTTCTGTGATGCCTTTGCGCTCTGATGGCTCTCTGTGTGTCACCCACTCTGCTGCACCACATGAATGGAGATATGATGAGAATGGAATAGGCGGTGGTGGAAATTCATCAAATAATGAAGAAGGTCCAAAGCTTGAAGACTTCTTAGGATGCTACTCAAATAATCCCTCACCACCACCATCACTACCTCAAACCAAACCATTTTCTCAACCCTCCACCACCACCACCACCCAACAAAACCAAAACTTCTCAAAGATTAATATGAATGTTGCCCCACGGTATGTTACTACCACCACCACCAACAACAACAACAACACTAGAGAGATTGAAACATCATCATCACTGTTCCAGCCATTCAATCATCATCATCATGCTCTCATACCGGGGAATGGGGTTTACAAGACATCATGGTTGGCACAAAGTTGTTGCTCTTCTCCATCTTCAGCAGAGGCAAATAATCAAAATAGTAGTAGTAACAATAATAATGGTGGGTGCAATTTCCAAACTCTGTCACTGACAATGAGTCCAAGCAATGTTCAACAACAGCAACAACAAAATGGTGGTGGGATGGTGATGGTGGTGGGGGGTGGAATAAACAACCATCAAGTAGTCCTTCATCAGGTTGATGATGAGAGTCGTAAAAGATCCATTGTTAAATCTCAAGGCAGAGAACCTGTGCCTCGTAAATCTATTGACACTTTTGGCCAGAGAACTTCTCAATATCGTGGTGTTACAAGGCATAGATGGACTGGTAGATATGAGGCTCATTTGTGGGATAATAGTTGCAGAAAGGAAGGACAAACAAGAAAAGGAAGGCAAGGTGGTTATGACAAAGAAGAAAAAGCAGCAAGAGCTTATGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATCAATTTCCCCTTAAGCACTTATGAGAAGGAACTTGAAGAGATGAAGCACATGAACAGACAAGAATTTGTCGCCAATTTGAGAAGGAAGAGCAGTGGATTTTCAAGAGGAGCATCTGTGTATAGAGGTGTGACAAGGCACCACCAACATGGAAGGTGGCAAGCTCGTATAGGAAGGGTTGCAGGCAACAAGGACTTGTATCTTGGTACATTTAGCACACAAGAAGAAGCTGCAGAAGCATATGATATTGCAGCAATCAAGTTCAGGGGAACAAGTGCGGTGACCAATTTCGACATAAGCAGGTACGATGTGAAGAGAATTTGCTCAAGCTCAACCCTAATTGCCGGAGACCTTGCGAAACGGTCTCCTAAAGACTCGACTCTGGCCATCGCCGACGACTTCAACTCAAGTGGTTCTGCCACACCTTCTCAACCAACTCCTTTGGCAATAACTGATGGCGAACACTCTGATGAGTTGCCCAACATGGTGTGGAATGGCGATGATGACGAGCAACAGCAAAATGAGACCGGAACCATCAACAACAACAATGTTGCTGGTCCATCATCATCGCAACAGGTTTCGCCGGGCAACAAGAATGCGGCGAACCCACCACAAAGCCCGAATGAATTCGGGGTGAATGGAGCAGATTATGGACATGGATATTTCAGTCTGGAGGGGCCACCAAAATATGATGATGGAAACAATGAACATGAAAACAGGATTGGGAGTCTGGGTTTGGTTAATCAAGTTCCTATGTTTGCTTTGTGGAATGAATAA 1794 0.4404 MSNWLGFSLTPHLRINEEFERQIHQENGNGGGGRGTYPSSSSVMPLRSDGSLCVTHSAAPHEWRYDENGIGGGGNSSNNEEGPKLEDFLGCYSNNPSPPPSLPQTKPFSQPSTTTTTQQNQNFSKINMNVAPRYVTTTTTNNNNNTREIETSSSLFQPFNHHHHALIPGNGVYKTSWLAQSCCSSPSSAEANNQNSSSNNNNGGCNFQTLSLTMSPSNVQQQQQQNGGGMVMVVGGGINNHQVVLHQVDDESRKRSIVKSQGREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMNRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKDSTLAIADDFNSSGSATPSQPTPLAITDGEHSDELPNMVWNGDDDEQQQNETGTINNNNVAGPSSSQQVSPGNKNAANPPQSPNEFGVNGADYGHGYFSLEGPPKYDDGNNEHENRIGSLGLVNQVPMFALWNE 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc301g00005 597 MobiDBLite consensus disorder prediction 469 489 - -
Stsc301g00005 597 PRINTS Ethylene responsive element binding protein signature 419 439 IPR001471 GO:0003700|GO:0006355
Stsc301g00005 597 PRINTS Ethylene responsive element binding protein signature 281 292 IPR001471 GO:0003700|GO:0006355
Stsc301g00005 597 MobiDBLite consensus disorder prediction 64 128 - -
Stsc301g00005 597 MobiDBLite consensus disorder prediction 249 270 - -
Stsc301g00005 597 ProSiteProfiles AP2/ERF domain profile. 379 437 IPR001471 GO:0003700|GO:0006355
Stsc301g00005 597 SUPERFAMILY DNA-binding domain 378 439 IPR016177 GO:0003677
Stsc301g00005 597 FunFam AP2-like ethylene-responsive transcription factor 378 439 - -
Stsc301g00005 597 Pfam AP2 domain 280 335 IPR001471 GO:0003700|GO:0006355
Stsc301g00005 597 Pfam AP2 domain 378 429 IPR001471 GO:0003700|GO:0006355
Stsc301g00005 597 ProSiteProfiles AP2/ERF domain profile. 280 343 IPR001471 GO:0003700|GO:0006355
Stsc301g00005 597 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 77 521 - -
Stsc301g00005 597 SMART rav1_2 379 443 IPR001471 GO:0003700|GO:0006355
Stsc301g00005 597 SMART rav1_2 280 349 IPR001471 GO:0003700|GO:0006355
Stsc301g00005 597 MobiDBLite consensus disorder prediction 505 548 - -
Stsc301g00005 597 MobiDBLite consensus disorder prediction 107 128 - -
Stsc301g00005 597 SUPERFAMILY DNA-binding domain 279 345 IPR016177 GO:0003677
Stsc301g00005 597 Gene3D AP2/ERF domain 379 439 IPR036955 GO:0003700|GO:0006355
Stsc301g00005 597 Gene3D AP2/ERF domain 279 345 IPR036955 GO:0003700|GO:0006355
Stsc301g00005 597 FunFam AP2-like ethylene-responsive transcription factor ANT 279 345 - -
Stsc301g00005 597 MobiDBLite consensus disorder prediction 249 266 - -
Stsc301g00005 597 CDD AP2 378 439 IPR001471 GO:0003700|GO:0006355
Stsc301g00005 597 MobiDBLite consensus disorder prediction 24 45 - -
Stsc301g00005 597 CDD AP2 279 345 IPR001471 GO:0003700|GO:0006355
Stsc301g00005 597 MobiDBLite consensus disorder prediction 469 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc301g00005 Stsc-Chr301 26050 30821 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc301g00005 1 465 AP2-EREBP Transcription Factor Family AT1G72570 49.693 1.85e-136 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Stsc301g00005 AP2 1.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc301g00005 K09285 - gmx:100809762 736.102