Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc301g00001 ATGGGAAGGAGTCCTTGTTGTTCTAAGGAAGGTTTGAACAAAGGAGCATGGACAGCCATGGAAGACAAAATTCTCACCGATTACATTAACATTCATGGTGAAGGAAAATGGAGACACTTGCCCAAAAGAGCAGGGCTTAAGAGATGTGGGAAAAGTTGCAGGCTGAGGTGGTTGAATTATCTAAGACCAGGCATCAAAAGAGGAAACATTACTAACGATGAAGAAGAGCTTATAATCCGCCTTCACAACCTTCTTGGAAACAGGTGGTCCTTAATTGCTGGGAGGCTTCCAGGACGAACAGACAATGAAATTAAGAATTATTGGAATACAAATATTGGTAGGAGGCTTCAAAATTGTTCATCATCAAATCTGCCCCAACCGGATCCGGATCCAAATCCAAATCCAAAAACTCGGGAATGGAATAATAGTGGTTCTTGTTTGGTTCAAACTAAAGCCACAAGGTGGCCTAATAATAACAAGGTCATACTCACCAAAGAAATTACAAAACAAAATGATGAAGCCAACAATGATCATAATAATCATCACATTAATCATAATAGTGATGATGCTAATAATGTCACTGGAGGAAGCATCGATGAAGCGTTGGATTTCATGGCGGATTTTCAAATGATGGAGGGAAATATTTATTCCGAGCTTTTCAAGATGGACTTTGCAGAATCATCGTCGTGTTTGGAAAATAACATATTGGAAGGAACTCTTAATAATAATAATCTTTTATATCCAAAATTATCATTCAATGACAACACCACCAACGTTAACGACTACAGCCATTCCCATGGGCCATCATCTTCTTGGGCTGATTTATTGTATGATACGGGTTTTGATTTTCAGCCCATGGCAACTTTTATGGAGTCTGGATTTTGA 885 0.3876 MGRSPCCSKEGLNKGAWTAMEDKILTDYINIHGEGKWRHLPKRAGLKRCGKSCRLRWLNYLRPGIKRGNITNDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNIGRRLQNCSSSNLPQPDPDPNPNPKTREWNNSGSCLVQTKATRWPNNNKVILTKEITKQNDEANNDHNNHHINHNSDDANNVTGGSIDEALDFMADFQMMEGNIYSELFKMDFAESSSCLENNILEGTLNNNNLLYPKLSFNDNTTNVNDYSHSHGPSSSWADLLYDTGFDFQPMATFMESGF 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc301g00001 294 MobiDBLite consensus disorder prediction 172 192 - -
Stsc301g00001 294 Gene3D - 14 66 - -
Stsc301g00001 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc301g00001 294 SMART sant 13 63 IPR001005 -
Stsc301g00001 294 SMART sant 66 114 IPR001005 -
Stsc301g00001 294 CDD SANT 16 61 IPR001005 -
Stsc301g00001 294 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc301g00001 294 Gene3D - 69 142 - -
Stsc301g00001 294 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 205 - -
Stsc301g00001 294 MobiDBLite consensus disorder prediction 118 142 - -
Stsc301g00001 294 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc301g00001 294 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc301g00001 294 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Stsc301g00001 294 FunFam MYB-related transcription factor 13 66 - -
Stsc301g00001 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc301g00001 294 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Stsc301g00001 294 CDD SANT 71 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc301g00001 Stsc-Chr301 9937 12202 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc301g00001 1 116 MYB Transcription Factor Family AT2G16720 75.000 1.13e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc301g00001 Myb_DNA-binding 1.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc301g00001 K09422 - gmx:100804950 328.946