Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc3011g00001 ATGCCTAAAGTCTTCTCTAGCCACCATGATTGGTACAAATCTACCCTTTCTTTGGCATTGGAAAATGACCATAATACCCCTCTTCCCGCTAACAAGCTAATCTATTCCTACAAAAATGTCATGAATGGTTTTAGTGCAAGTTTGACACCTCAAGAGCATGAACTAATCAAAGCCTCACCAGGTTACATTTCTTCAGTTCTTGATGTCAAAGTCAAACTCCACACAACACACACTCCAAAATTCCTTGGCCTTAATCCAAGTTTTGGTGCATGGCCTAGTTCACAATATGGCAAAGATGTAATTGTTGGTCTTGTGGATACTGGGATTTGGCCAGAAAGTGAGAGCTTCAAAGATAATGGTGGATTCAGCAATGTCCCTTCAAGATGGAAAGGTCAATGTGAGAATAGCATCCATTTCAATTCATCAAATTGCAACAAGAAACTCATTGGTGCTAAGTTCTTTAACAAAGGGTTTATTGCACATAACCCTAAGATCAAGTTACCCATGTCTACCCGTGATATTGAAGGCCACGGTACCCATACCTCGTCGACCGCCGCGGGTGGCATAGTTCATAACGTATCATATTTTGGGTACGCAAAGGGAACAGCCACAGGAATAGCACCAATGGCACATTTGGCTATGTACAAAGCCTTATGGGGCGAAGCTTCATACTCAACAGACGTAATTGCAGCCATTGATAGTGCAATTGAAGATGGTGTTGATGTTCTTTCACTCTCTTTTGGTTTTGATGATGTGCCATTGTACTCTGACCCGGTTGCAATAGCAACGTTTGCAGCCGTGGAGAAAGGCATATTTGTAACCGCTTCCGCAGGGAACGATGGGCCCGCCCTTCAAACACTTCACAACGGAACACCGTGGGTTATAACCGTTGCTGCTAGCACTGTGGACCGTGAGTTTCACGGTACACTGGTGCTAGGCAACGGTATTGAAATTATCGGATTGTCCCTCTATCCGGGACCTAATGTAATTAGCCACACTTCAATAGTGTACATGGGGATTTGCAACAACACTAAGGAATTACACAAAGTTAAGGACAAGATTGTTGTGTGTGAGGAAAATAGATTAGTCTCTCTTGATGATCAAGCTTTGAATATTCTCACTGCAAAAGTGTTTGCTAGTGTGTTCATATCAAACAATAGTGAGGAGATCTTGTTCTTCTTACAAAGCGAAAATTTCCCATCACTTGTTGTTAATCCCATGGATGGTAAGATTATTAAGGATTACATTAGGGTTGGTGGTAATGATTTGAAAGCTAGCATGTCTTTTAAGGTGACATCCTATGGCACAAAACCAAACCCTAGTCTTGATTTCTATAGCTCTAGAGGGCCATCGTCTACTTGTCCAAATGTTCTCAAGCCGGACATAGCGGCTCCCGGAACGTTGATCTTCGCGGCATGGGCTCGCGAGTCTCCGGTAGAAGAATTGGGATCCAAAGAGCTTTTGAGCAATTTTAATATAATAAGTGGAACGTCAATGGCATGTCCTCATGTTGCGGGCGTAGCTGCCCTTCTTAAGGGTGCATACCCTCAATGGAATCCTTCGACGATAAGGTCGGCAATTATGACAACTTCGGACATATTGGACAACACAAAGAAACACATCAAAGATCTTGGCAATGGTAATAAAGCAACTCCTCTAGCCTTAGGAGCTGGCCATGTTAACCCAAATAAAGCACTTGACCCTGGCCTAGTTTACAATTTGGAGATGCAAGATTATGTGAACCTTCTTTGTGCAATGAAGATGACACAAAAGCAGATCAAAGCAATCACAAGAAGATCCTCATACAATTGCCCTAAAAACCCTAAATTGGATCTTAATTACCCTTCTTTCATTGCTTTCTATACTAATGAGTCAAGGACATTAGTACATGAATTTCATAGGACAGTGACCAATGTTGGGGAGGGACATGCTATCTATGTAGCTAGTGTTACACCAATAAAAGGGTTCCACGTCAGCGTGGTCCCGGAGAAGTTGGTGTTCAAGAAGAAGAATGAGAAGCAAAGTTACAAGTTGAGGATTGAAGGTCCAAAAATGATGATGAAGAAGCAAATTGATTTTGGGTATCTAAGTTGGACCGATTTGAAGCATGTTGTGAGGAGTCCTATTGTGGTCACAAGCCTCCACTTACATAAACATATTTAA 2163 0.4212 MPKVFSSHHDWYKSTLSLALENDHNTPLPANKLIYSYKNVMNGFSASLTPQEHELIKASPGYISSVLDVKVKLHTTHTPKFLGLNPSFGAWPSSQYGKDVIVGLVDTGIWPESESFKDNGGFSNVPSRWKGQCENSIHFNSSNCNKKLIGAKFFNKGFIAHNPKIKLPMSTRDIEGHGTHTSSTAAGGIVHNVSYFGYAKGTATGIAPMAHLAMYKALWGEASYSTDVIAAIDSAIEDGVDVLSLSFGFDDVPLYSDPVAIATFAAVEKGIFVTASAGNDGPALQTLHNGTPWVITVAASTVDREFHGTLVLGNGIEIIGLSLYPGPNVISHTSIVYMGICNNTKELHKVKDKIVVCEENRLVSLDDQALNILTAKVFASVFISNNSEEILFFLQSENFPSLVVNPMDGKIIKDYIRVGGNDLKASMSFKVTSYGTKPNPSLDFYSSRGPSSTCPNVLKPDIAAPGTLIFAAWARESPVEELGSKELLSNFNIISGTSMACPHVAGVAALLKGAYPQWNPSTIRSAIMTTSDILDNTKKHIKDLGNGNKATPLALGAGHVNPNKALDPGLVYNLEMQDYVNLLCAMKMTQKQIKAITRRSSYNCPKNPKLDLNYPSFIAFYTNESRTLVHEFHRTVTNVGEGHAIYVASVTPIKGFHVSVVPEKLVFKKKNEKQSYKLRIEGPKMMMKKQIDFGYLSWTDLKHVVRSPIVVTSLHLHKHI 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc3011g00001 720 ProSiteProfiles Serine proteases, subtilase domain profile. 81 566 - -
Stsc3011g00001 720 Gene3D Peptidase S8/S53 domain 99 579 IPR036852 GO:0004252|GO:0006508
Stsc3011g00001 720 CDD Peptidases_S8_3 71 532 IPR034197 -
Stsc3011g00001 720 PRINTS Subtilisin serine protease family (S8) signature 173 186 IPR015500 -
Stsc3011g00001 720 PRINTS Subtilisin serine protease family (S8) signature 495 511 IPR015500 -
Stsc3011g00001 720 PRINTS Subtilisin serine protease family (S8) signature 97 116 IPR015500 -
Stsc3011g00001 720 FunFam Subtilisin-like protease SBT1.5 99 312 - -
Stsc3011g00001 720 Gene3D - 583 714 - -
Stsc3011g00001 720 SUPERFAMILY Subtilisin-like 73 570 IPR036852 GO:0004252|GO:0006508
Stsc3011g00001 720 Pfam Fibronectin type-III domain 611 711 IPR041469 -
Stsc3011g00001 720 ProSitePatterns Serine proteases, subtilase family, serine active site. 496 506 IPR023828 -
Stsc3011g00001 720 CDD PA_subtilisin_like 309 421 - -
Stsc3011g00001 720 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 29 711 IPR045051 -
Stsc3011g00001 720 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 1 74 IPR037045 -
Stsc3011g00001 720 Pfam Subtilase family 97 542 IPR000209 GO:0006508|GO:0008236
Stsc3011g00001 720 Pfam Peptidase inhibitor I9 3 74 IPR010259 -
Stsc3011g00001 720 Gene3D - 303 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc3011g00001 Stsc-Chr3011 187 3388 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc3011g00001 2 714 Subtilisin-like Serine Gene Family AT5G67090 44.870 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc3011g00001 - - gmx:100781249 905.205