LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc2g00074	ATGTCGCTCAAGAGGCGCCCCGAAGACGCCAAGCACAAATCCGATACTTCCACTCCCGACGACAAGCGTCCCCGGCCTCCTCCCTTTGCCAATGTGGTGCGCGAGATGATGAAGATACAGTCTGTCAAGCATTTGCTCGAGCCAATTCTTGAGCCCTTGATTCGTCGAGTGGTTAAGGAGGAAGTAGAATTGGCCTTAAGGAAGCATTTAACCAGCTTGAAACAGACTGGTGGAAAGGAGATGCATACTTCTGAATTGAGAAGCTTGCAGCTGCAGTTTGAAAACAACATTTCTCTTCCAGTGTTCACTGGAGCTCGGATTGAAGGAGAGGATGGCTCCAACTTAAGAGTAGTATTAGTTGATGTGTCGACAGGGAAGGTTGTTAGTTCAGGACCTGAATCCTTAGCTAAGGTGGAAATTGTGGTCCTTGAGGTTGTGGACAACTTTGATGGTGTTAGAATAAGAGAAGCAAAGACAGAGTCATTTATTGTTAGGGATCACCGAGGAGAATTGTACAAGAAGCACCACCCCCCTAATCTGTTTGATGAAGTTTGGAGACTGGAGAAGATAGGCAAGGATGGAGCTTTCCACAAACGTCTAAGTCGGGAAAAGATCTACAGTGTGAAAGATTTTCTTACACTTCTCAATTTGGATCCTGCAAAGCTACGCAGTATACTGGGCACTGGCATGTCTGCAAAGATGTGGGAAATAACCGTGGAGCATGCTCGAACTTGTACAATTGATACGACGAGACATGTTTATTTCCCTCCCCCTTCCCAACAGAAAGCTGGTGTAGTCTTCAATGCTGTGGGACAAGTGACGGGACTACTCTCTGAATGCGAGTATGTCCTGGTACATAAGCTGTCGGAAACCGAAAAGGCTGATGCTCAAGAATTGGTCATTTCTGCAATCAAACAAGGCGAGAAATTTTCCTCATATGAAGATGAAGCCTCTCTTTTGGAGGGTTCTTCACATCTAACTAATGTTCTTTATTCCTCGAACTCACCGAATACTGAGGGATCCAGCGCCAACAAGCTTTTGGCTCCTCAAAAGACTGAAGGTCCCACTTACACACCAGCAAGTGCCTCATCTCCTGATATCATGTCATCCATTTATTCTGTTGGAGGAACCAGTGCCTTGGATGACTTCTGCATGCCTAACTTCGACAGCATGAGCTTTGGTTTTCCAGTCCAGGTTGCCAACACGCTGATCTGCGACCCAGATCCAATGGCCCATGCATTTGGAGACGAAGATCATCTGCGCTTTTTTGATACCGATCAGGATTTGCAGAGCGCTGTTGATAGCTTCATGCTGACGCGCTCATCCATTGCCATTGGTAAAGCTCAGAGGAGATGGAGAAAGGTAACCAACGTCCTAAAGTGGTTCATGGTGAGGAAACGAAAAAGCGAAAGATACTAA	1419	0.463	MSLKRRPEDAKHKSDTSTPDDKRPRPPPFANVVREMMKIQSVKHLLEPILEPLIRRVVKEEVELALRKHLTSLKQTGGKEMHTSELRSLQLQFENNISLPVFTGARIEGEDGSNLRVVLVDVSTGKVVSSGPESLAKVEIVVLEVVDNFDGVRIREAKTESFIVRDHRGELYKKHHPPNLFDEVWRLEKIGKDGAFHKRLSREKIYSVKDFLTLLNLDPAKLRSILGTGMSAKMWEITVEHARTCTIDTTRHVYFPPPSQQKAGVVFNAVGQVTGLLSECEYVLVHKLSETEKADAQELVISAIKQGEKFSSYEDEASLLEGSSHLTNVLYSSNSPNTEGSSANKLLAPQKTEGPTYTPASASSPDIMSSIYSVGGTSALDDFCMPNFDSMSFGFPVQVANTLICDPDPMAHAFGDEDHLRFFDTDQDLQSAVDSFMLTRSSIAIGKAQRRWRKVTNVLKWFMVRKRKSERY	472

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc2g00074	472	Pfam	Calmodulin binding protein-like N-terminal domain	89	144	IPR046831	-
	Stsc2g00074	472	PANTHER	OS02G0177800 PROTEIN	143	349	IPR012416	GO:0005516
	Stsc2g00074	472	Pfam	Calmodulin binding protein C-terminal domain	252	310	IPR046829	-
	Stsc2g00074	472	MobiDBLite	consensus disorder prediction	1	28	-	-
	Stsc2g00074	472	Pfam	Calmodulin binding protein central domain	180	245	IPR046830	-
	Stsc2g00074	472	MobiDBLite	consensus disorder prediction	1	22	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc2g00074	Stsc-Chr2	448303	452183	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc2g00074	143	294	Calmodulin-binding Proteins	AT5G62570	65.789	1.56e-67	219

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc2g00074	-		-	gmx:100793156	519.235