Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc2g00073 | ATGGCAGCCACATTTGGAGGTACAACACAGAAGTGCAAAGCATGTGAAAAGAAGGTCTATTGGGTGGAGCAGCTCACTGCTGACAACAAGGTCTATCATAAATCTTGCTTCAGATGTCACCATTGCAAGGGTACCCTCAAGCTGAGTAATTATTGTTCATTTGAGGGAGTTCTATACTGCAAGCCTCATTTTGATCAACTTTTTAAGATGACTGGAAGCTTGGAAAAAAGTTTTGAAGGAGTTCCAAGAACTGCCAGGGTTGAAAGAACTGCTGATCAGGTACAAAGCAATAATAGCAAGGTTTCAAGATTGTTTGCAGGGACTCAAGAAAAATGTGTTGGTTGCAAGAAAACAGTATACCCTATTGAAAAGGTGGGTGTGGATGGAAAATGTTACCATAAGGGATGTTTCAGGTGCAGCCATGGAGGGTGTGTAATAAGCCCATCAAATTATGTGGCCCATGAACATCGCATTTATTGCAAGCATCACCATACTCAGCTATTCAAGCAGAAGGGTAACTTCAGCCAATTTGACATTCAGCATCAAAATAATGGCCATAGCAATGGTCATGGGATTTCTGAGAATAATAACACAAATTCTTCTGAGTAG | 609 | 0.4089 | MAATFGGTTQKCKACEKKVYWVEQLTADNKVYHKSCFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLEKSFEGVPRTARVERTADQVQSNNSKVSRLFAGTQEKCVGCKKTVYPIEKVGVDGKCYHKGCFRCSHGGCVISPSNYVAHEHRIYCKHHHTQLFKQKGNFSQFDIQHQNNGHSNGHGISENNNTNSSE | 202 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc2g00073 | 202 | PANTHER | OS06G0237300 PROTEIN | 6 | 95 | - | - | |
| Stsc2g00073 | 202 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 138 | 176 | - | - | |
| Stsc2g00073 | 202 | CDD | LIM2_SF3 | 112 | 172 | - | - | |
| Stsc2g00073 | 202 | SMART | lim_4 | 11 | 63 | IPR001781 | - | |
| Stsc2g00073 | 202 | SMART | lim_4 | 111 | 163 | IPR001781 | - | |
| Stsc2g00073 | 202 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 104 | 137 | - | - | |
| Stsc2g00073 | 202 | ProSitePatterns | LIM zinc-binding domain signature. | 12 | 46 | IPR001781 | - | |
| Stsc2g00073 | 202 | Gene3D | Cysteine Rich Protein | 106 | 176 | - | - | |
| Stsc2g00073 | 202 | Gene3D | Cysteine Rich Protein | 7 | 76 | - | - | |
| Stsc2g00073 | 202 | MobiDBLite | consensus disorder prediction | 178 | 202 | - | - | |
| Stsc2g00073 | 202 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 5 | 37 | - | - | |
| Stsc2g00073 | 202 | ProSiteProfiles | LIM domain profile. | 10 | 70 | IPR001781 | - | |
| Stsc2g00073 | 202 | Pfam | LIM domain | 112 | 167 | IPR001781 | - | |
| Stsc2g00073 | 202 | Pfam | LIM domain | 12 | 66 | IPR001781 | - | |
| Stsc2g00073 | 202 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 38 | 78 | - | - | |
| Stsc2g00073 | 202 | ProSiteProfiles | LIM domain profile. | 110 | 170 | IPR001781 | - | |
| Stsc2g00073 | 202 | FunFam | LIM domain and actin-binding 1 | 6 | 76 | - | - | |
| Stsc2g00073 | 202 | FunFam | LIM domain and actin-binding 1 | 106 | 176 | - | - | |
| Stsc2g00073 | 202 | CDD | LIM1_SF3 | 8 | 69 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc2g00073 | Stsc-Chr2 | 442832 | 444944 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Stsc2g00073 | LIM | 3.9e-10 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc2g00073 | K09377 | - | gmx:100792627 | 356.295 |