Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2g00063 ATGGTTGTGATGATGAACCCAATCTTGGTACTCTCCATAAACACCATACTGTTCTTATTATTCTCTCCAATGGCTTATTCATCAGAGAGCGAAATGGTGAAGAGCGCATTGGTGAGATTCATGGACAATCTTGCACCATGGGAGAGAGAAGCAACAAGGTACTGGGGATGGAACCTTGAGACAGATCCATGCAGAGATAGGTGGAAAGGTGTGAGTTGTTCCTCAGATGGAAGTGTGAAAACCATAGTTCTTGATGATTCAAACCTCAGTGGAACCCTTGATGCTACCTCTCTCTGCATGGCCAAGTCTCTTCAGATTGTGAGCCTCAAGAGGAACAACTTGCATGGATCCATACCTGAAGCCATTGGAGACTGCAAGTATTTGACTCGTTTGTATCTCAGTGATAACAACTTCTCCGGTAACCTTCCAAATTCTCTTGAGCATTTATGCAGCTTGAGGTGGATTCACATTGCCAGAAACAACTTCACTGGCCCCCTTTCTGATAAGTTACCTACTTCATCCTTGATATCCTTTCTCGGTGAGAATAACAACTTCAGCGGTGAGATACCTGATTTTGACTTCACAAAGTTGATTCAATTCAACGTCTCCAACAACAACTTGAAGGGTCAGATCCCTGACGTGAGGAATAAGTTTGGTGTGGAAAGTTTTTCTGGCAATCCTGACTTGTGTGGATTGCCACTTCCGACGGCCTGTCCACCTAGTCCATCGCCAAGGAAAGAAAAAAGACTATTTATCACCGACGGCGTGGCCATTTATTCCGGCTACATCATTCTTGGCATCACCGTGGTGGCATTCTTTGTGTACAAACTGGCGAGGAAATCCGTGTGCAAATCGGAACCATCAGAAGCTCTCAACAAGAAAGAAGGCACAAGGCAACGGTTAACTCGAGGCAATGATGGTGGAAGGAAGAGAGAGGATTGTTGTTGCGAGAGCAAGAGTGGTGGTGGCGGCGGCGGTGGAGGTGTGGAGATGAGATCGGAGCCTTCAATAGCATCACTAGAGAGTGGAATAACATTGATGAGCACATCAACGCTGGTTGTTCTGTCAAGCAGGGTATCAAAGGCGATGAGGTTCGAGGATCTGCTGAGAGCACCGGCTGAGTTGATTGGGAGAGGGATGCATGGGAGCCTCTACAAGGTGATGCTTGACAATGGTGTGTTCTTGGCTGTTAAGAGGATCAAGGATTGGGGCATCTCTGAAGCTGATTTTCAGAGGAGAATTTGCAAAGTTAGCCAAGTTAACCATCCATCTCTTTTGCCACCTCTTGCTTACTATTGTTCCCGCCAAGAGAAGCTTCTTGCATACGAGTACATGGACAATGGCAGTCTCTTCAACACGCTCTACGCAGCTGGATCACAAAATGGAAAACCCTTTTGGTGGGGAAGCAGACTAAATGTTGCTGCAAAAGTAGCAGAAACTTTAGCTTACATGCATGAAGAGCTTCGTGAGAGTGGAATAGCACATGGAAACTTAAAATCAAGCAACATTTTGTTCAACAACAACATGGAACCATTAATAAGTGAGTATGGCCTAATGGTAATTGAACACCAGCAAGCTCTGAGATCACTCTCTCACAGCAAGAGTGTGAGGAACAGGGTCCTAACTGCTGCACATGCATACAGCACCTTCAAAGTTGATGTATACGCCTTCGGTGTGATCCTGTTGGAGCTTGTCACAGGGAGAGTGGCTTACAATCAAGGTGCTTTTGATCTGGTTAAGTGGGTTAATTCTGTGGTTAGAGAGGAATGGAGTGTTGAAGTGTTTGATAAAAACTTGGTGTCAGAAGGTGCTAGTGGAGAGAGGATGATGAGCTTGTTGCAGATTGCATTGAAATGCATCAATCCTTCTCCTTCTGATAGACCAAGCATGAGTGAAGTTGCATTAGCCTTAATTGCTTTGAATGAGGAGGAAGAAACTTCTTTAAACATCTAG 1953 0.4511 MVVMMNPILVLSINTILFLLFSPMAYSSESEMVKSALVRFMDNLAPWEREATRYWGWNLETDPCRDRWKGVSCSSDGSVKTIVLDDSNLSGTLDATSLCMAKSLQIVSLKRNNLHGSIPEAIGDCKYLTRLYLSDNNFSGNLPNSLEHLCSLRWIHIARNNFTGPLSDKLPTSSLISFLGENNNFSGEIPDFDFTKLIQFNVSNNNLKGQIPDVRNKFGVESFSGNPDLCGLPLPTACPPSPSPRKEKRLFITDGVAIYSGYIILGITVVAFFVYKLARKSVCKSEPSEALNKKEGTRQRLTRGNDGGRKREDCCCESKSGGGGGGGGVEMRSEPSIASLESGITLMSTSTLVVLSSRVSKAMRFEDLLRAPAELIGRGMHGSLYKVMLDNGVFLAVKRIKDWGISEADFQRRICKVSQVNHPSLLPPLAYYCSRQEKLLAYEYMDNGSLFNTLYAAGSQNGKPFWWGSRLNVAAKVAETLAYMHEELRESGIAHGNLKSSNILFNNNMEPLISEYGLMVIEHQQALRSLSHSKSVRNRVLTAAHAYSTFKVDVYAFGVILLELVTGRVAYNQGAFDLVKWVNSVVREEWSVEVFDKNLVSEGASGERMMSLLQIALKCINPSPSDRPSMSEVALALIALNEEEETSLNI 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2g00063 650 MobiDBLite consensus disorder prediction 288 330 - -
Stsc2g00063 650 Pfam Protein kinase domain 374 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc2g00063 650 SUPERFAMILY Protein kinase-like (PK-like) 373 637 IPR011009 -
Stsc2g00063 650 PANTHER OS05G0588300 PROTEIN 16 637 - -
Stsc2g00063 650 ProSiteProfiles Protein kinase domain profile. 370 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc2g00063 650 SUPERFAMILY L domain-like 57 234 - -
Stsc2g00063 650 Gene3D Phosphorylase Kinase; domain 1 345 444 - -
Stsc2g00063 650 Gene3D Ribonuclease Inhibitor 178 238 IPR032675 -
Stsc2g00063 650 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Stsc2g00063 650 FunFam Leucine-rich repeat receptor protein kinase EMS1 95 192 - -
Stsc2g00063 650 Gene3D Transferase(Phosphotransferase) domain 1 445 649 - -
Stsc2g00063 650 MobiDBLite consensus disorder prediction 288 317 - -
Stsc2g00063 650 ProSitePatterns Protein kinases ATP-binding region signature. 376 398 IPR017441 GO:0005524
Stsc2g00063 650 Gene3D Ribonuclease Inhibitor 30 177 IPR032675 -
Stsc2g00063 650 Pfam Leucine rich repeat 103 162 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2g00063 Stsc-Chr2 380613 383618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2g00063 53 633 Receptor kinase-like Gene Family AT1G48480 33.388 4.97e-87 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc2g00063 Pkinase 1.3e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2g00063 - - ahf:112695663 1061.6