Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2g00062 ATGAACAAGTACTCATCATCATCATCATCTTCTCCATTCCAATCTCGTTCTTATGATGCTAATAGCATGCCATCATCATTATCTGTAATTAGCAGAATAAGCCCACTCATTCTGTTAGTTATAATAGTCTTAGCAGTTATCTTCTTTGCTTATGGACTTGTCCATCTGGTTCTGTGGTTCTTCATGAAAGCCCTCTCATCATCTTCATCTTCTTCATTGCTGTCACCATCTCTCTACAACTCCAACAGGTTCCTGCACCAAGAATCATGGAGGCGCTCCAGAGCACTTCAGAGACAGCTTCATCATCTCTTCCGAATGCACGATTCGGGCCTAGAGCAATCCATCATTGATGCTCTCCCAGTGTTCCACTACCAAGACTTGTTGGGTGTGAATAAAGAACCGTTTGATTGTGCAGTGTGCCTCTGTGAATTCTCCCATGAAGAGAAGCTGAGGTTGGTTCCAATTTGCAGCCATGCATTTCACATGAACTGCCTTGACACGTGGCTTCTCTCAAACTCAACATGCCCTCTCTGTAGAGCAACTCTCTCTAGCTCTAATGTGAACCAGAACCAGAACCAGAACCAGAATGAGAATCCATCAGAAGAGAACAAGAATAATGGTGATGAAGGAAGAGGAGTAAGTAAAAGGGTGTTAAGTGTGAGACTTGGGAAACTGAGGAACAGTGGATTGAGTGAAAGAGAAGAGAGTAGTAGTAGTAGTAGTAGTTTGGGATTGGATGGGAGAAGATGCTATTCAATGGGTTCATATGAGTATGTGGTTAGAGAATCGAATAATGTGCTAGTGGAAGTGGTGTTATCCCAGTCTCTTCATCATCATCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAAAGAAGATAGGGAATAAGAGAAGAAGAGGTGAGAGCTTCTCAGTTTCAAAGATTTGGCAATGGTCTAACAAGATCAAATATAATAATAATCATGGCTCCAATGCAGATGCAGATGGAGATGCAGATTTTCCATTGTGA 1008 0.4177 MNKYSSSSSSSPFQSRSYDANSMPSSLSVISRISPLILLVIIVLAVIFFAYGLVHLVLWFFMKALSSSSSSSLLSPSLYNSNRFLHQESWRRSRALQRQLHHLFRMHDSGLEQSIIDALPVFHYQDLLGVNKEPFDCAVCLCEFSHEEKLRLVPICSHAFHMNCLDTWLLSNSTCPLCRATLSSSNVNQNQNQNQNENPSEENKNNGDEGRGVSKRVLSVRLGKLRNSGLSEREESSSSSSSLGLDGRRCYSMGSYEYVVRESNNVLVEVVLSQSLHHHQEEEEEEEEEGKKIGNKRRRGESFSVSKIWQWSNKIKYNNNHGSNADADGDADFPL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2g00062 335 CDD RING-H2_EL5-like 136 179 - -
Stsc2g00062 335 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
Stsc2g00062 335 Pfam Ring finger domain 136 179 IPR001841 -
Stsc2g00062 335 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 31 309 - -
Stsc2g00062 335 MobiDBLite consensus disorder prediction 186 201 - -
Stsc2g00062 335 MobiDBLite consensus disorder prediction 186 213 - -
Stsc2g00062 335 SMART ring_2 137 178 IPR001841 -
Stsc2g00062 335 FunFam E3 ubiquitin-protein ligase ATL6 99 185 - -
Stsc2g00062 335 SUPERFAMILY RING/U-box 115 185 - -
Stsc2g00062 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 186 IPR013083 -
Stsc2g00062 335 MobiDBLite consensus disorder prediction 276 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2g00062 Stsc-Chr2 379070 380077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2g00062 52 316 C3H Transcription Factor Family AT2G18650 37.700 1.84e-51 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2g00062 - - adu:107492421 368.237