Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2g00057 ATGGGTTGGCTTAAGTCTGCATTAGACCACCCTTCTTCTTTAGTCAAAGCAAGAGAAATCTGCAACAAATTCAATGGTAAAAAACTTGTTCTTGGTGTTGATGATATGGACATTTTCAAAGGTATCAGCCTAAAGCTCTTGGCGATCGAACAACTCCTTCAGCAGTATCCGGAATTTCAGGGGGAACTTGTGCTAGTCCAGATTGTGAATCCTCCAAGGAGTAATGGCAAAAACGTCGAGGAAGCGAAGAAGGAGACATACATTACTGCTAATAGGATAAATGAGAGGTTTGGTTTTCCTGGTTACCAACCTGTCATAATCATTGATCATCCTCTACCTGTGTATGAGAAGATTTCCTACTTTGCTTTGGCAGATTGTTGCATTGTGAATGCAGTAAGGGATGAATTCATGGGTTGCTCACCATCTCTTAGTGGTGCAATCAGGGTGAATCCATGGGACATCAATGGTGTTGCTGAAGCATTAAATTTGGCCATCAAAATGCCCGGCCGAGAGAAACAGTTGCGACACGATAAGCATTATCGGTATGTTAGGTCTCATGATTTAGCTTACTGGAGCAGTAGTTTTTTGAGGCATCTAGAACACTCCTGTAAGGATCATTTTAGGAATCATTGCTGCGCAAGTTTCAGGAAGGTTTCCAATGATGAAATTGTCTCTTCATATAGAAGGACAAGTTGCAGGGCACTTTTTCTGGATTATGATGGTACAATTGTACCTCACTCCTCCATTGTTAAAACCCCCAGTCCTGAAGTCATAGCCATTCTAAACAACATTTGCAATGACCCTAACAACACAGTGTTTATAGTAAGTGGCAGAGGAAAAACCACATCGGGTGAATGGTTTCAATCAGTATGGGGACAGCAATCAACTTGGGAAATGAGTCATATATGTACAAATTTTGCATGGAAAAAGATTGTTGAACCTGTGATGAGGTTGTATACCGAGGCAACGGACGGATCCTATATAGAGACCAAAGAGAGTGCCTTGGTATGGCATTATTGCGACGCGGATCCTGATTTCAGATCATGGCAAGCCAAGCAGCTGCTAGATCACCTGGAAAGTGTTCTTGCAAATGAGCCTGTAGTTGCTAAGAAGGGAAAGCATATCATTGAAGTAATGCCACAGGGAATTACTAAAGGTCTAGTTGCAGAGGAAGTTCTTTCTTCGATGAGCGAAATTGGGGATGATAAGTCTGATGAGGGACATGTTTGA 1230 0.4203 MGWLKSALDHPSSLVKAREICNKFNGKKLVLGVDDMDIFKGISLKLLAIEQLLQQYPEFQGELVLVQIVNPPRSNGKNVEEAKKETYITANRINERFGFPGYQPVIIIDHPLPVYEKISYFALADCCIVNAVRDEFMGCSPSLSGAIRVNPWDINGVAEALNLAIKMPGREKQLRHDKHYRYVRSHDLAYWSSSFLRHLEHSCKDHFRNHCCASFRKVSNDEIVSSYRRTSCRALFLDYDGTIVPHSSIVKTPSPEVIAILNNICNDPNNTVFIVSGRGKTTSGEWFQSVWGQQSTWEMSHICTNFAWKKIVEPVMRLYTEATDGSYIETKESALVWHYCDADPDFRSWQAKQLLDHLESVLANEPVVAKKGKHIIEVMPQGITKGLVAEEVLSSMSEIGDDKSDEGHV 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2g00057 409 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 348 407 - -
Stsc2g00057 409 Pfam Glycosyltransferase family 20 4 134 IPR001830 GO:0003824|GO:0005992
Stsc2g00057 409 Pfam Glycosyltransferase family 20 135 200 IPR001830 GO:0003824|GO:0005992
Stsc2g00057 409 Pfam Trehalose-phosphatase 236 406 IPR003337 GO:0003824|GO:0005992
Stsc2g00057 409 Gene3D - 303 381 - -
Stsc2g00057 409 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 5 204 - -
Stsc2g00057 409 Gene3D Glycogen Phosphorylase B; 136 185 - -
Stsc2g00057 409 Gene3D Glycogen Phosphorylase B; 3 135 - -
Stsc2g00057 409 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 135 407 IPR001830 GO:0003824|GO:0005992
Stsc2g00057 409 FunFam Trehalose-6-phosphate synthase 2 303 381 - -
Stsc2g00057 409 Gene3D - 235 406 IPR023214 -
Stsc2g00057 409 SUPERFAMILY HAD-like 233 406 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2g00057 Stsc-Chr2 362856 364420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2g00057 1 406 Trehalose Biosynthesis Gene Families AT1G23870 52.697 1.46e-172 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2g00057 K16055 - gmx:100787744 575.089