Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2g00054 ATGGCAGCTCGCAGACTTTCATGGCTCCTCTCACGCTCTCTTTCTGCTGCTTCTGGACCTGACTCTCTGCTTCACTCACTTGGAAGAAACAGTGGCGGAGGGATAAGAAAATGGAAGAGGTTTAGCACAGCTGCAGCGGTTGATGAAGTGATTATTCCACAAGTTCAAATCCCTTACACTCAGCATCTCATAGATGGCAAGTTTGTGGATTCTGCATCAGGGAAGACTTTCCCTACCTATGACCCGCGCACAGGGGAAGTTATAGCTCAAGTAGCAGAGGGAGACGCTGAAGATATCAACCGCGCGGTCGTGGCGGCACGAAAGGCCTTCGACGAAGGACCCTGGCCTAAAATGACTGCTTATGAAAGGTGTCGGATATTGCTGCGGTTTGCTGATCTGGTGGAGAAGCATAGATCAGAGCTTGCAGCACTAGAGACATGGGACAATGGGAAGCCATATCAGCAATCTTTCAACGATGAGCTGCCAATGTTTGTGCGTTTGTTCCATTATTATGCTGGTTGGGCAGACAAAATTCACGGGATGACAGTACCAGCTGATGGAAAATATCACGTGCAAACGTTGCATGAACCGATTGGGGTAGCAGGACAAATCATACCTTGGAATTTTCCTCTGCTTATGTTTGCTTGGAAAGTTGGTCCTGCTCTTGCTTGCGGTAACACCATCGTTTTGAAGACTGCTGAGCAAACACCATTAACTGCTCTTTATGTCGCTAAACTCCTTCATGAGGCTGGTCTTCCACCAGGTGTTGTGAATATAGTTTCTGGATATGGCCCAACTGCTGGTGCAGCTCTTGCAAGTCACATGGACGTTGACAAGCTAGCATTTACTGGATCAACAGAAACTGGGAAAATTGTGCTTGAATTGGCTGCAAGAAGCAATCTGAAGCCTGTGACATTGGAGCTGGGAGGCAAATCACCTTTCATTGTTTATGACGATGCTGATGTTGACCAAGCTGTTGAAGTTGCACACTTTGCTCTCTTCTTTAATCAGGGACAATGCTGCTGTGCTGGGTCCAGAACCTTTGTACATGAGCGTATCTATGATGAGTTCTTGGAGAAGTCAAAGAAACGTGCTTTGAAACGTGTTGTTGGTGATCCATTCAAGAACGGTGTTGAACAAGGCCCTCAGATTGACACAGAACAATTTGAGAAAGTGCTTAGGTACATAAGATCTGGAATTGAAAGCAATGCTACCCTCGAATGTGGAGGTCAGAGACTGGGCTCAAAAGGCTTCTTCATCCAGCCAACTGTCTTCTCCGATGTTAAGGATGAGATGCTGATAGCACAAGACGAAATATTTGGGCCGGTTCAGACCATCTTGAAATTCAAGGACACTGAAGAAGTAATAAGGAGGGCAAATGCAACAAGATATGGACTAGCAGCAGGAGTGTTCACCAAGAACGTGCACACAGCAAACACATTGATGAGAGCACTGAGAGTTGGAACGGTGTGGATCAACTGTTTTGATGTGTTTGATGCTGCAATTCCCTTTGGAGGCTACAAGATGAGTGGTACTGGGAGGGAGAAGGGAATCTACAGTCTCAACAACTACCTTCAGATCAAAGCTGTTGTTGAACCACTCAAGAATCCTGCATGGATTTAA 1623 0.4621 MAARRLSWLLSRSLSAASGPDSLLHSLGRNSGGGIRKWKRFSTAAAVDEVIIPQVQIPYTQHLIDGKFVDSASGKTFPTYDPRTGEVIAQVAEGDAEDINRAVVAARKAFDEGPWPKMTAYERCRILLRFADLVEKHRSELAALETWDNGKPYQQSFNDELPMFVRLFHYYAGWADKIHGMTVPADGKYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLTALYVAKLLHEAGLPPGVVNIVSGYGPTAGAALASHMDVDKLAFTGSTETGKIVLELAARSNLKPVTLELGGKSPFIVYDDADVDQAVEVAHFALFFNQGQCCCAGSRTFVHERIYDEFLEKSKKRALKRVVGDPFKNGVEQGPQIDTEQFEKVLRYIRSGIESNATLECGGQRLGSKGFFIQPTVFSDVKDEMLIAQDEIFGPVQTILKFKDTEEVIRRANATRYGLAAGVFTKNVHTANTLMRALRVGTVWINCFDVFDAAIPFGGYKMSGTGREKGIYSLNNYLQIKAVVEPLKNPAWI 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2g00054 540 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 312 501 IPR016163 GO:0016620
Stsc2g00054 540 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 46 530 - -
Stsc2g00054 540 Pfam Aldehyde dehydrogenase family 68 530 IPR015590 GO:0016491
Stsc2g00054 540 CDD ALDH_F2BC 57 531 - -
Stsc2g00054 540 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 306 313 IPR029510 GO:0016491
Stsc2g00054 540 FunFam Mitochondrial aldehyde dehydrogenase 2 312 501 - -
Stsc2g00054 540 SUPERFAMILY ALDH-like 54 534 IPR016161 GO:0016491
Stsc2g00054 540 FunFam Aldehyde dehydrogenase, putative 502 528 - -
Stsc2g00054 540 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 334 345 IPR016160 GO:0016491
Stsc2g00054 540 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 64 322 - -
Stsc2g00054 540 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 74 530 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2g00054 Stsc-Chr2 349070 354944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2g00054 1 540 Aldehyde Dehydrogenase Gene Family AT3G48000 79.705 0.0 903
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2g00054 K00128 - gmx:100811501 930.243