Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2g00053 ATGAATCAGAATAATAATCAAAGGGACCGCCGTGTGCTATCACTATCGGCGGTGCATCCTTGCGAAGGGATATCTCCGGCCACCCTCATCTCCTCCCTTGTTACCCTCTCCCAGAACATATGCAACTACCAAGACAGCTTCTTCTCAACACAGAGACGAAACGCAAGAGAAGCAATCCGCCAAGTCAGCATCATCCTCCTCTTCCTTCTCGAAATTCAAGAACGAACCTCACCAATCCCTCAATCCACCGTCCTCAGCCTCTCGGAACTTCACTTCACGTTCCAGAAGATTCATTTCTTGCTGCAAGATTGCGCGCGGGAAGGCACGCGCCTCTTGCTTCTCGCCAAGTCCAACCACGTGGCTTCCCTATTCCGATCCCTAGTTCGCGCCGTCGCGACGTCTCTCGACGTTCTTCCACTCCACGAGATCGAGGTTTCCGGCGAGGTGAGGGAGCTGGTGGAGCTGGTGGCGAAGCAAGCGAGGAAAGCAAAAATGGAGCACGAGGCTAAAGACGAACGCGGCAGCAAGAGAGTACATTCAATTCTAAAACAATTAGAAAAGGGAATCGAACCAGATAAGAATGCATTGAAAGAGATCATCGACTACCTAGAAATCAAGAGTTGGAACGAGTGTAACAAAGAGATAAACCTTCTAGAAGAAGAAATCGCTTTGGAATGCAACGAGCGAGAGCGAGAGTGTCCTCTACTGAGTGGCTTGTTAGGGTTCATGAGCTACTGCAGGGTAGTGATGTTCGAAACAGTAGAAATGAACAAATCAGAAACGAGAGTGAGCACGGAAATGATCACGACTGTTAATCCAGAGGACTTCCGGTGCCCGATATCTCTGGAGATGATGACGGATCCCGTGACGGTTTCAACAGGACAGACGTACGACAGAGCTTCCATCAAGAAATGGCTGAAAGCAGGGAACACCATATGCCCTAAAACAGGGGAGAATCTCTCAAACACTGAGCTCCTCCCAAACACAACGCTCAAGAGACTCATCCAACAGTTCTGCAATGATAACGGTATTTCCCTCTCAAAATCAACCAACCGCAACCGCGACTTAGCCAGAACGATATTCCCAGCCAGTGCGGCCAACGCTCACGCCATGCAGTTCCTCTCATGGCACCTCGCGCGGATGCTCGCCTTCGGTACGGACAAACAGAAATCCAAAGCCGCTTACGAGATTCGGTTACTCGCAAGGTCCAACTTGTTCAACAGAGCCTGCTTGATCCAAGTCGGAACCATTCCGCATCTGCTCGATCTTCTTCTCTCCACGGACGACAAATCCACGCAGGAAAACGCAGTTTCCGCGTTGATGAAGCTCTCTAAGCACGCCAGTGGGCCCCAGCACATCATGGACTCTAACGGTCTGAAACCGATTCTAACGGTTTTAAAGAAAGGGCTGAGCCTCGAAGCACGTCAAGTTGCGGCAGCTACTGTTTTCTACCTTGCGTCGGTGAGAGAGTATAGGAAGGTGATAGGGGAAAACCCTGAGGTGGTTCGTTCTCTGGTGGAGTTGGTGAACGAAGGAACCACGTGCGGGAAGAGGAATGCGGTGGTTGCCATTTACGGTTTGGTTGTTGTTCCAAGGAACCAGAAACGAGCAATCGAAGCGGGTGTAGTTCACGCGCTTGTTGGCGCGTTGGGATCGTGCGGGAAGGAGGAGCTTGTAACAGAATGTTTGGCGGTTTTGGCTGTTTTGGCTGAGAATGCGGAAGGAGCTAACGCGATCTTGCGCGCGTCGGCCCTACCGCTGATTACTGGGATGCTCCAAACGGCGTCGTCGCGCGTGGGGAAAGAGCACTGTGCTTCGATCTTGCTTTCGCTGTGTGTTAACATTGGCGCGGAGGTTGTGGCGGTTTTGGCGAAGGACCCTTCGGTGATGCCTCTGCTTTACTCGCTTCTCACGGAAGGTACCTCCCACGCGGCGAAGAAAGCGAGGTTCCTCATAAAAGTTCTGCAGGATTTTAGTGAAAGCAGAGCTTCGGGATTCAAGGGTTCCTCTGTTCCGCAGGAACCATCGCTTCGTGTTTGGTGA 2043 0.5159 MNQNNNQRDRRVLSLSAVHPCEGISPATLISSLVTLSQNICNYQDSFFSTQRRNAREAIRQVSIILLFLLEIQERTSPIPQSTVLSLSELHFTFQKIHFLLQDCAREGTRLLLLAKSNHVASLFRSLVRAVATSLDVLPLHEIEVSGEVRELVELVAKQARKAKMEHEAKDERGSKRVHSILKQLEKGIEPDKNALKEIIDYLEIKSWNECNKEINLLEEEIALECNERERECPLLSGLLGFMSYCRVVMFETVEMNKSETRVSTEMITTVNPEDFRCPISLEMMTDPVTVSTGQTYDRASIKKWLKAGNTICPKTGENLSNTELLPNTTLKRLIQQFCNDNGISLSKSTNRNRDLARTIFPASAANAHAMQFLSWHLARMLAFGTDKQKSKAAYEIRLLARSNLFNRACLIQVGTIPHLLDLLLSTDDKSTQENAVSALMKLSKHASGPQHIMDSNGLKPILTVLKKGLSLEARQVAAATVFYLASVREYRKVIGENPEVVRSLVELVNEGTTCGKRNAVVAIYGLVVVPRNQKRAIEAGVVHALVGALGSCGKEELVTECLAVLAVLAENAEGANAILRASALPLITGMLQTASSRVGKEHCASILLSLCVNIGAEVVAVLAKDPSVMPLLYSLLTEGTSHAAKKARFLIKVLQDFSESRASGFKGSSVPQEPSLRVW 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2g00053 680 Gene3D - 363 664 IPR011989 -
Stsc2g00053 680 PANTHER U BOX DOMAIN-CONTAINING 56 655 - -
Stsc2g00053 680 FunFam RING-type E3 ubiquitin transferase 352 666 - -
Stsc2g00053 680 ProSiteProfiles U-box domain profile. 271 345 IPR003613 GO:0004842|GO:0016567
Stsc2g00053 680 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 415 458 IPR000225 GO:0005515
Stsc2g00053 680 SUPERFAMILY RING/U-box 269 345 - -
Stsc2g00053 680 SMART Ubox_2 275 338 IPR003613 GO:0004842|GO:0016567
Stsc2g00053 680 SMART arm_5 530 571 IPR000225 GO:0005515
Stsc2g00053 680 SMART arm_5 403 445 IPR000225 GO:0005515
Stsc2g00053 680 SMART arm_5 446 487 IPR000225 GO:0005515
Stsc2g00053 680 SMART arm_5 572 613 IPR000225 GO:0005515
Stsc2g00053 680 FunFam RING-type E3 ubiquitin transferase 272 344 - -
Stsc2g00053 680 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 346 IPR013083 -
Stsc2g00053 680 Pfam U-box domain 273 342 IPR003613 GO:0004842|GO:0016567
Stsc2g00053 680 SUPERFAMILY ARM repeat 380 655 IPR016024 -
Stsc2g00053 680 Pfam Armadillo/beta-catenin-like repeat 407 440 IPR000225 GO:0005515
Stsc2g00053 680 CDD RING-Ubox_PUB 273 325 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2g00053 Stsc-Chr2 342109 344151 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2g00053 10 677 U-box Gene Family AT1G60190 37.977 2.05e-155 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2g00053 - - tpra:123884536 857.825