Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2g00050 ATGCATATCAGAGGCCTCGATTTCAAGTGGTACGATGCCTTCTTCTTGTCCATGCTCGCCACCAGTATAGTTATTGTGGCAATTAACTGGAGGCGCTACCATTCTTGTATATATCCTTTGCACATATGGATTGTGGTTGACTATACTATGGTGTTCATTTTCCGGCTTTTGATGTTTGTTGATAATGGGTTTGCTTCTGGAATGGGTTTAGATTTTGGGTGGCAACAGAGATATGCTCGATTCTGTGGAAGAGTAGTAGTTCTTTCAATCCTTGCATTGCTTCTCTATCCATTTCTGTGGGCTTGGACTATAATTGGTACCCTGTGGTACAGCAGTTCCAAGAAATGTTTGCCTGAAGATGGTCAGAAATGGGGCTTTCTTATCTGGTTACTTTTTAGCTACTGTGGACTGCTTGGCATTTCTTGCTTGTCAATAGGGAAGTGGTTGACACGAAGACAAGCACACCTATTACGAGCACAACAGGGTATACCAGTATCAGAATATGGGGTTCTAGTTGATATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCAGGTCAGGAAACAAGGGGTTTGGCCCAAGATGCTGCAACATATCATCCAAGACTTTACCTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCAAGAACTCCCAAAGTTCACGTTGAAGGCTGTCCCCACTGACTGCAGCGAATGCCCAATCTGCTTGGAAGAGTTCTACCTTGGGAATGAGGTTAGAGGCCTGCCTTGTGCTCATAATTTTCACGTTGCATGCATTGATGAGTGGCTGAGGCTGAATGTGAAATGTCCTCGGTGCCGTTGCTCTGTGTTTCCAAATCTTGATCTTAGTGCTCTGTCCAATCTCCGTCCTGATTCTGAAAGATCTTCTGCTAGTGTTGTGACAACTACCAGATATGTGAGAGGCCAACCTTCTAGTCAAAGTCACCGGTTGAGATTACATGGCCTCCCCCGTCCAGTTCGTGCTGAGATTGCTGGGCCAGTTGCTGCCACAGGCAATGCTTTGGAAAATGCTGATAACGGGATTGTGTCCAATGTAGAGATTCAAAATGCAATGAGTGGAAACCAGGTATCTGCTGTTGAATGTATGCCTGTCACTCATTCCTCTGCACAAAGTTAG 1146 0.4511 MHIRGLDFKWYDAFFLSMLATSIVIVAINWRRYHSCIYPLHIWIVVDYTMVFIFRLLMFVDNGFASGMGLDFGWQQRYARFCGRVVVLSILALLLYPFLWAWTIIGTLWYSSSKKCLPEDGQKWGFLIWLLFSYCGLLGISCLSIGKWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRGLAQDAATYHPRLYLTPAQREAVEALIQELPKFTLKAVPTDCSECPICLEEFYLGNEVRGLPCAHNFHVACIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRPDSERSSASVVTTTRYVRGQPSSQSHRLRLHGLPRPVRAEIAGPVAATGNALENADNGIVSNVEIQNAMSGNQVSAVECMPVTHSSAQS 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2g00050 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 357 IPR044793 GO:0004842|GO:0010182
Stsc2g00050 381 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
Stsc2g00050 381 SMART ring_2 235 275 IPR001841 -
Stsc2g00050 381 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Stsc2g00050 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 281 IPR013083 -
Stsc2g00050 381 SUPERFAMILY RING/U-box 216 284 - -
Stsc2g00050 381 Pfam Ring finger domain 234 276 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2g00050 Stsc-Chr2 326097 329529 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2g00050 58 355 C3H Transcription Factor Family AT3G47990 72.425 2.56e-153 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2g00050 K16284 - gmx:100812016 681.019