Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2g00046 ATGGCGATGGCGAAGAACCTGTACTGGTTGAAGGAAATGTCGAACAACGTGAAATCAGGTGGAAGGAGAGGAGGGAGGAGGCTGTCGCTAGGGGAATACAGAAGAGCGGTGTCGTGGTCCAAGTACATAGTATCTTCAGGAGCGGCCATTAAAGGAGAAGGAGAAGAGGAATGGAGCGCGGATCTGTCGCAGCTGTTCATAGGTTCGAAATTCGCATGCGGAAGGCATAGCAGGATATACAGAGGGATATACAAGCACATGGATGTTGCAATAAAGCTTGTGAGTCAGCCGGAGGAGGATGAGGAGTTGGCTGCTCAGCTTGAGAACCACTTCACTTCTGAGGTTGCGCTTCTCTTTCGCTTGCACCATCCTAATATCATTACTTTTGTAGGAGCTTGCAAGAAGCCCCCTGTATTTTGCATAATCACAGAATACTTAGCTGGTGGCTCATTGAGAAGCTTCCTTCAAAGGCAAGGCCCACATTCACTCCCTCTAAAACTTGTTCTAAAGTTAGCCTTAGACATTGCCAAGGGTATGCAATACCTTCACTCTGAGGGCATACTCCATAGGGATCTCAAATCGGAGAATCTTCTATTGGGTGAAGATATGTGTGTTAAAGTCGCAGACTTTGGGATCTCATGCTTGGAATCCCAGATTGGTAGCGCGAAAGGGTTCACTGGAACTTACCGTTGGATGGCGCCGGAAATGATCAAGGAGAAGCACCATACCAAGAAAGTAGATGTCTACAGTTTCGCCATTGTTCTTTGGGAGCTTCTAACAGGACTAACACCCTTTGAGAATATGACACCAGAACAGGCAGCATTTGCAGTGACTCACAAGAATGCAAGGCCTCCATTACCATGTGATTGTCCATGGGCATTTAGTAATCTAATAAACAAATGCTGGTCAAGCAATCCAAAAAAACGACCACACTTTGATGAGATAGTGTCTATCTTGGAGAGCTACATAGAATCACTTGAACAAGATCCTGAATTTTTCACCAATTACAAACCACTTCCTCGGACACGTAATTTCATTCTCAGATGCTTACCTGAGTGTAACTCTCGCCATGTATCCTCTTCTTCTTCTTCCAAAGCTTAG 1101 0.4541 MAMAKNLYWLKEMSNNVKSGGRRGGRRLSLGEYRRAVSWSKYIVSSGAAIKGEGEEEWSADLSQLFIGSKFACGRHSRIYRGIYKHMDVAIKLVSQPEEDEELAAQLENHFTSEVALLFRLHHPNIITFVGACKKPPVFCIITEYLAGGSLRSFLQRQGPHSLPLKLVLKLALDIAKGMQYLHSEGILHRDLKSENLLLGEDMCVKVADFGISCLESQIGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFAIVLWELLTGLTPFENMTPEQAAFAVTHKNARPPLPCDCPWAFSNLINKCWSSNPKKRPHFDEIVSILESYIESLEQDPEFFTNYKPLPRTRNFILRCLPECNSRHVSSSSSSKA 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2g00046 366 Gene3D Transferase(Phosphotransferase) domain 1 147 350 - -
Stsc2g00046 366 Pfam Protein tyrosine and serine/threonine kinase 68 319 IPR001245 GO:0004672|GO:0006468
Stsc2g00046 366 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 58 322 - -
Stsc2g00046 366 SUPERFAMILY Protein kinase-like (PK-like) 54 319 IPR011009 -
Stsc2g00046 366 FunFam Serine/threonine-protein kinase isoform 1 55 147 - -
Stsc2g00046 366 ProSiteProfiles Protein kinase domain profile. 65 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc2g00046 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Stsc2g00046 366 SMART serkin_6 65 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc2g00046 366 CDD STKc_MAP3K-like 67 319 - -
Stsc2g00046 366 PRINTS Tyrosine kinase catalytic domain signature 143 156 IPR001245 GO:0004672|GO:0006468
Stsc2g00046 366 PRINTS Tyrosine kinase catalytic domain signature 246 268 IPR001245 GO:0004672|GO:0006468
Stsc2g00046 366 PRINTS Tyrosine kinase catalytic domain signature 290 312 IPR001245 GO:0004672|GO:0006468
Stsc2g00046 366 PRINTS Tyrosine kinase catalytic domain signature 181 199 IPR001245 GO:0004672|GO:0006468
Stsc2g00046 366 PRINTS Tyrosine kinase catalytic domain signature 227 237 IPR001245 GO:0004672|GO:0006468
Stsc2g00046 366 Gene3D Phosphorylase Kinase; domain 1 55 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2g00046 Stsc-Chr2 290645 295490 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2g00046 38 353 MAP Kinase Kinase Kinase AT1G62400 60.000 5.49e-135 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Stsc2g00046 PK_Tyr_Ser-Thr 1.3e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2g00046 - - gmx:100778530 604.364