Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2g00040 ATGGGTTTCTCCTCTCTCCACGTCTGCATGGATTCATCATCCTCCGATAATAATTGGCTTCAGGGCACAATTAACGAGGATGGCAGTAGAGGGATGATGGATGATTCTTCTTGTCCATCCCCAACAACAGGAGGAGGGGAGATGATGATGATTGCATGCTCAAACAAGTTGCCAACAATGATCATAGAAGGAAGCAGTAGTAATGGCAGGAGGTTAATGACAAGACCCCCACAGGATCAACTAGCTCTAAAGTGTCCAAGGTGTGAATCAACACACACAAAGTTCTGTTACTACAACAACTACAGCCTCTCACAGCCAAGGTACTTTTGCAAATCTTGTAGAAGGTATTGGACCAAAGGTGGAACTCTTAGGAACATTCCTGTTGGTGGTGGTTGTAGAAAGAACAACACCAAGAAACCCTCCTCTTCTTCTAATTCCTCTAAGAAATCATCATCATCCATTAATAACAACAACAGTATTGACCAACCATCACCACTTCCTATTAGTAGTATTAATGTTAATAGTAATAATCATAACCAGCTACATTATCCTTCTAATAATAGTTTCCCAGATCTGCATCAATTCTCATCTAACATGAGCAATTTGTTTGGGATGACTAGTATTGGAGGGGGGTTATTGGGAAACCCTAATTTCATGTTTGAGAATAATAATAATAATAACCCTAGGCCATTGGACTTCATGATGGAGAGTGGTATGATTAAGAGTAGTGGTTCTAGAAGCTTTGATTTTCTTGGAAATAGTGATCATCATCATATGATGATGAATGGTGGTGGTAATTACAATGTGATGATGTCATCATCACCAAATTATCAAGGACTTTGCTCTTCAGCATTTGGGGGAAATAATAATAATAACGTGTCACTTGATGGAGGGAACAATCACAACAACAACAACAATGCTGGGAGTTACAACATTATGGGATCTTGTCAGAGATTGATGCTACCATATGATGATTCAGGTGACAATGGCAATCAAAATAGTTTCATTGATGTGAAGCCAAACCCTAGGCAATTGTTGTCCCTTGATGGAAAAGAGACATTTGGGTCATGGACTACTACTGGGATGATGAACGGCTATGGATCTTCCACAACAAATCCTTTGGTCTAG 1128 0.3972 MGFSSLHVCMDSSSSDNNWLQGTINEDGSRGMMDDSSCPSPTTGGGEMMMIACSNKLPTMIIEGSSSNGRRLMTRPPQDQLALKCPRCESTHTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNIPVGGGCRKNNTKKPSSSSNSSKKSSSSINNNNSIDQPSPLPISSINVNSNNHNQLHYPSNNSFPDLHQFSSNMSNLFGMTSIGGGLLGNPNFMFENNNNNNPRPLDFMMESGMIKSSGSRSFDFLGNSDHHHMMMNGGGNYNVMMSSSPNYQGLCSSAFGGNNNNNVSLDGGNNHNNNNNAGSYNIMGSCQRLMLPYDDSGDNGNQNSFIDVKPNPRQLLSLDGKETFGSWTTTGMMNGYGSSTTNPLV 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2g00040 375 ProSitePatterns Zinc finger Dof-type signature. 85 121 IPR003851 GO:0003677|GO:0006355
Stsc2g00040 375 ProSiteProfiles Zinc finger Dof-type profile. 83 137 IPR003851 GO:0003677|GO:0006355
Stsc2g00040 375 Pfam Dof domain, zinc finger 82 137 IPR003851 GO:0003677|GO:0006355
Stsc2g00040 375 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 73 255 IPR045174 GO:0003700|GO:0006355
Stsc2g00040 375 MobiDBLite consensus disorder prediction 135 185 - -
Stsc2g00040 375 MobiDBLite consensus disorder prediction 127 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2g00040 Stsc-Chr2 234748 236672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2g00040 1 133 C2C2-Dof Transcription Factor Family AT5G62940 57.447 1.45e-40 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc2g00040 zf-Dof 1.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2g00040 - - aip:107631971 522.316