Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2g00030 ATGGTTAGGAAAAAGGCAGAGGATGCAGGCCCATCTGCAAAGACTAAGCCAAGTGGCAAAGATGCCCCTAAGAAGGAAAAAATTTCCATCTCTGCCATGCTGGCCAGCATGGACGAAAAGCCCGATAAACCCAAAAAGCCCTCTTCCACTAAGCCCAAGCCAAAAGCTGCTCCAAAACCTTCTGCATATACTGATGGTATTGATCTTCCTCCATCTGATGAAGATGAGGTAGATGAAGCTCTCTTGGAGGAGGAGGAAGAGAATTTCTCCAAACGGCAGCAGAGGAGTGAGCAGAAGGCACTTGAAATATCAACCACAGACAAAGAGCTGAAGAAGCGTGAGAAGAAGGATATTTTAGCAGCGCATGCTATTGAGCAGGCAAAGAAGGAAGCTCTTAAGGATGATCATGATGCTTTCACTGTGGTAATTGGAAGTCGGACTTCAGTGCTTGATGGAGATGATGACGCCGATGCTAATGTCAAAGATATAACAATAGAGAATTTCTCAGTGTCTGCCCGGGGTAAAGAACTCCTGAAGAATGCATCAGTGAAGATATCTCATGGGAAGAGGTATGGTTTGGTTGGACCCAATGGAAAGGGGAAGTCCACACTATTGAAGCTTCTTGCTTGGAGGAAGATACCAGTACCTAAGAATATTGATGTCCTTCTGGTTGAGCAGGAGGTAGTTGGCGATGACAAAACAGCACTTGAAGCTGTTGTTTCAGCTAATGAAGAACTGGTTAAAGTTCGACAAGAAGTTGCTTCTCTGCAAAATGCAACTTCTGCAGAAGAAAGTGCTGACAAAGATAATAATGATGAGGAAGATGATGCAGGAGAGAAGCTAGCAGAGCTGTACGAGAAACTACAGATAATGGGTTCTGATGCTGCTGAAGCTCAAGCATCAAAGATTTTAGCGGGTTTGGGTTTCACAAAGGATATGCAGGGCCGGCCAACAAAATCTTTCAGCGGTGGGTGGAGAATGAGGATTTCTTTAGCTCGAGCACTTTTTGTGCAGCCAACATTATTATTGCTTGATGAACCCACAAATCACCTTGACTTGAGGGCTGTTCTCTGGTTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATAGAGATTTCCTCAATACAGTTTGCACTGAGATTATTCATCTTCATGACATGAAACTCCATTTTTATCGTGGAAACTTTGATGACTTTGAGAGTGGGTATGAACAGCGTCGTAAAGAGATGAACAAGAAGTATGAGATATATGACAAGCAACTGAAAGCTGCAAAAAGGAGTGGTAACCGAGCTCAGCAAGAAAAGGTGAAGGACCGAGCGAAGTTTGTGGCAGCCAAAGAAGCATCTAAAGCCAAGGGCAAGGGCAAGAACAAGGTTGATGAAGACGAGGTCCCACCAGAGGTTCCACAGAAGTGGAGGGATTACAGTGTTGAGTTTCACTTTCCTGAACCTACCGAGCTCACTCCTCCACTTCTTCAACTTATTGAAGTGAGCTTCAGTTATCCAAACCGTGAGGATTTCAGACTGTCAGATGTTGATGTTGGCATTGATATGGGAACTCGTGTTGCCATTGTTGGGCCCAACGGAGCTGGAAAATCTACACTATTGAACCTCCTTGCTGGTGATTTGGTTCCTACTGAGGGTGAAGTTAGGAGGAGTCAGAAGTTACGGATAGGAAGATACTCGCAACACTTTGTAGACCTTTTAACTATGGATGAAACCCCCGTTCAGTATCTTCTTCGTCTCCATCCTGACCAGGAGGGACTTAGCAAGCAAGAGGCTGTCCGTGCAAAACTTGGTAAGTTTGGGCTACCTAGTCATAACCATCTCACCCCTATTGCCAAACTATCAGGAGGGCAGAAGGCTAGGGTGGTCTTTACCTCAATATCCATGTCAAGACCCCATATTTTATTGTTGGACGAACCCACTAATCATCTAGACATGCAAAGTATTGATGCATTGGCCGATGCACTAGACGAGTTCACTGGTGGAGTTGTTCTTGTTAGTCATGACTCGAGATTGATATCACGCGTATGTGAGGATGAAGAGAGGAGTCAAATATGGGTTGTTGAGGATGGTACTGTTCGGACTTCGGTTGGAACATTCGACGAGTACAAGGACGAGTTGATGAAAGAAATCAAAGCTGAAGTTGATGACTGA 2193 0.4346 MVRKKAEDAGPSAKTKPSGKDAPKKEKISISAMLASMDEKPDKPKKPSSTKPKPKAAPKPSAYTDGIDLPPSDEDEVDEALLEEEEENFSKRQQRSEQKALEISTTDKELKKREKKDILAAHAIEQAKKEALKDDHDAFTVVIGSRTSVLDGDDDADANVKDITIENFSVSARGKELLKNASVKISHGKRYGLVGPNGKGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANEELVKVRQEVASLQNATSAEESADKDNNDEEDDAGEKLAELYEKLQIMGSDAAEAQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLXXXXXXXXXXXXXXXXXXXXXDRDFLNTVCTEIIHLHDMKLHFYRGNFDDFESGYEQRRKEMNKKYEIYDKQLKAAKRSGNRAQQEKVKDRAKFVAAKEASKAKGKGKNKVDEDEVPPEVPQKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPTEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSRPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEERSQIWVVEDGTVRTSVGTFDEYKDELMKEIKAEVDD 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2g00030 730 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 503 728 IPR003439 GO:0005524
Stsc2g00030 730 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 163 429 IPR003439 GO:0005524
Stsc2g00030 730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 361 IPR027417 -
Stsc2g00030 730 FunFam ABC transporter F family member 4 468 730 - -
Stsc2g00030 730 Pfam ABC transporter 178 349 IPR003439 GO:0005524
Stsc2g00030 730 FunFam ABC transporter F family member 4 161 450 - -
Stsc2g00030 730 Gene3D - 160 450 IPR027417 -
Stsc2g00030 730 Pfam ABC transporter 520 655 IPR003439 GO:0005524
Stsc2g00030 730 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 116 724 - -
Stsc2g00030 730 Gene3D - 469 730 IPR027417 -
Stsc2g00030 730 Coils Coil 418 438 - -
Stsc2g00030 730 Coils Coil 239 259 - -
Stsc2g00030 730 SMART AAA_5 529 705 IPR003593 GO:0016887
Stsc2g00030 730 SMART AAA_5 187 494 IPR003593 GO:0016887
Stsc2g00030 730 MobiDBLite consensus disorder prediction 69 84 - -
Stsc2g00030 730 MobiDBLite consensus disorder prediction 258 278 - -
Stsc2g00030 730 Coils Coil 359 359 - -
Stsc2g00030 730 CDD ABCF_EF-3 503 705 - -
Stsc2g00030 730 MobiDBLite consensus disorder prediction 85 114 - -
Stsc2g00030 730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 482 714 IPR027417 -
Stsc2g00030 730 MobiDBLite consensus disorder prediction 1 114 - -
Stsc2g00030 730 Coils Coil 381 382 - -
Stsc2g00030 730 ProSitePatterns ABC transporters family signature. 321 335 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2g00030 Stsc-Chr2 174455 178083 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2g00030 502 715 Calmodulin-binding Proteins AT2G36910 29.167 2.09e-14 75.5