Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2g00029 ATGAACCTTGACACAAATAATAATCTCAGAGAAAACCATGTCTTGATGTTACAACAAATGGATTTGCATGAAAACTACTTCAAACCAAACCTGAAAGCTAATAACCTTCCTTTTGAGGCTCCTTCATCCCAAAATAATTTCATGCAAGATTTTCACAACAATGATCATCATCATCACTTTAATCATGTGAATGGGTCTTCATCATCAAATCCTCTAAATATTAACCCTTTTGGGAACTTAACATCATGTGTTTGTTCCCAAGGGGATTTGGAACTTTTTGAGGGGAAGCATTTTGTTGAGAGTGATAACGGTGGTGGTGGAAGCCACAATGATGTTATGAACAACTTCCAATATGAAGGTTATAGCTTAAACCTTCCAAGGAAAAATCAACTTGATGTGATTCTTGCAGAACAAGGCTACTCACACTTCAATCCTCTAGAAACCAAGCCTTTGAATTTCGTCGCGCCGGATGAAGTCTCGTGCATTTCTCCGGCGAAAGACAATGGCGCGTCTCTGACAACGAGTAGGAGGGCATTTAAGGCTCATAAGAAGTTAAACATGGTGAAGGGGCAATGGACAGCAGAGGAAGACAGATTGTTGAGCCAATTGGTTGAACAATATGGTGTGAGGAAGTGGTCGCATATTGCTCAGACATTGCCTGGAAGGATAGGGAAACAATGCAGGGAGCGTTGGCATAACCATCTAAGACCTGATATTAAGCCTACTAGTTCGGTTAAGCAAGAGCCGAGGCTTCGAATCTTGCCTTATGTATGCAGCAACCCATTGCCCAAAGGCAAATCCAACTCGGATCCGCAGTGGAAGCCTGCCGGGCACGGGATAGCGTGGAAGGAGATATGGACTGATGAAGAGGACAAGATACTGATCGAAGCTCACAAAGAGATAGGGAACAAATGGGCAGAGATTGCAAAGAGATTGGCGGGAAGAAGTGAGAACTCAATCAAGAACCACTGGAATGCAACAAAGAGAAGGCAAAACTCAAAAAGAAAATGCAGATCATCGAAGTACCCAAGAAACACTCTTCTGCAAGATTACATCAAGAGCCTCAACTTGGACAACAATAATCCACCAATAAACAACACAAAAAGATCTTCTCCTAATAAGGCCATGATCAACAACACTAGTACAAGCAAAGCAATTGTAATAGCACCAGCACAATCCAACAGTGATCGAATGGTGCCGAATTATGATTTTAATGATGTTCCGGGTTTGTGTTTTGATGATAACTTGTTTATTCAGGAGGGTTGTGGAATTGATTCTCTGCTGGATGATGTTCCTTGTGCTCCTACAATGGATGATCATGAAGGTTTTGATGATGGAAAGATGCAACAATGTTCTAGTAATAATAATAATAATCCTCATGCTGTTAAGGAGGAGATGGATTTGGTGGAGATTATGTCTCATCAGGGTAGTGTTCTTGGATCATTTCCAAGAACACTAAACCCTATACAGTAG 1473 0.4128 MNLDTNNNLRENHVLMLQQMDLHENYFKPNLKANNLPFEAPSSQNNFMQDFHNNDHHHHFNHVNGSSSSNPLNINPFGNLTSCVCSQGDLELFEGKHFVESDNGGGGSHNDVMNNFQYEGYSLNLPRKNQLDVILAEQGYSHFNPLETKPLNFVAPDEVSCISPAKDNGASLTTSRRAFKAHKKLNMVKGQWTAEEDRLLSQLVEQYGVRKWSHIAQTLPGRIGKQCRERWHNHLRPDIKPTSSVKQEPRLRILPYVCSNPLPKGKSNSDPQWKPAGHGIAWKEIWTDEEDKILIEAHKEIGNKWAEIAKRLAGRSENSIKNHWNATKRRQNSKRKCRSSKYPRNTLLQDYIKSLNLDNNNPPINNTKRSSPNKAMINNTSTSKAIVIAPAQSNSDRMVPNYDFNDVPGLCFDDNLFIQEGCGIDSLLDDVPCAPTMDDHEGFDDGKMQQCSSNNNNNPHAVKEEMDLVEIMSHQGSVLGSFPRTLNPIQ 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2g00029 490 Gene3D - 188 240 - -
Stsc2g00029 490 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 188 239 IPR017930 -
Stsc2g00029 490 SMART sant 282 330 IPR001005 -
Stsc2g00029 490 SMART sant 188 237 IPR001005 -
Stsc2g00029 490 PANTHER MYB PROTEIN-RELATED 178 373 - -
Stsc2g00029 490 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 286 332 IPR017930 -
Stsc2g00029 490 FunFam Transcriptional activator Myb isoform A 188 240 - -
Stsc2g00029 490 Pfam Myb-like DNA-binding domain 189 235 IPR001005 -
Stsc2g00029 490 Pfam Myb-like DNA-binding domain 286 325 IPR001005 -
Stsc2g00029 490 Gene3D - 285 344 - -
Stsc2g00029 490 CDD SANT 192 235 IPR001005 -
Stsc2g00029 490 ProSiteProfiles Myb-like domain profile. 286 328 IPR001005 -
Stsc2g00029 490 FunFam Transcription factor MYB119 284 349 - -
Stsc2g00029 490 SUPERFAMILY Homeodomain-like 186 324 IPR009057 -
Stsc2g00029 490 CDD SANT 286 328 IPR001005 -
Stsc2g00029 490 ProSiteProfiles Myb-like domain profile. 184 235 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2g00029 Stsc-Chr2 171556 173535 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2g00029 34 438 MYB Transcription Factor Family AT4G18770 42.757 2.17e-85 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc2g00029 Myb_DNA-binding 2.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2g00029 K09422 - gmx:100816653 434.876