Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2g00018 ATGCAAGATTTGAAACCTTTGATCACATACGCGTTCTTGATTATGTGCTCACTCTTATTATCCCCAAAGCTGGCTGCTGCTTCTTCCTCCGATAATTTTAACATTTTAGATGAAGTCTTTATCCAGTGTGGGACCACCGAATACCCGGACTTGGACCCCACCAAGATTGCCCGTATTTTCATGGTTCTCATGGACATGATTTCAACCGAAATTGAAAAACAAGGCTGGAGCACGGAATCCTTGATCAACCCACTCACCCAAATTTTCGCACTAGGGGAATGTCGCAGCGACCTCAACAGTAGCATATGCTTGAAATGCTTCCACAACGCTAGGGAACATTTGTCGCAATGCTTGCCAAAGGTAGCAGGGCGAGTGTTCATGGACGGTTGCTTTCTCCGTTACGACAACTATAGTTTCTTCAATGAAGCATTAGATAAGAAGTATGACAGTAGTGTTTGCATAAAGTCTCCTTTGAAGGAGAAGATGGAGAGCGATAGCAACGCAACGATCCAATATGGGTTCCAAGAAAAGGTTGGGAGGGCGGTATTGAACGTGACGGAGACGGCGTCGGGCGGGGCGGTTCACAAATTCGCGGTGAACGAGGACAGTAAGGACGTGTTTGCCCTGGCGCAGTGTTGGCATACATTGGACAGAGAAGGGTGTGAGAGGTGCTTGAAAAGAGCAGGGAGGAAATTGAATGATTGCATTATTGTTAACGATGAAGGTAAGAGCATGCTTGCTGGTTGTTTCTTGAAGTATTCCACTCGCAAATTCTACGCCGAAGAATTCAATGAGAACGCCGTCAAGGAGACTGATGTAAACGCTAATAATAAGGTGATTATTGCATCTTTATCGTCGGCGTTTGCTGTGACTTTGATGATCGTCGCATGTGTGATTATGAAAAGAAAGAAAGCACTATCTTGTACAGCAGGAACGGATGATAGCACCAAGATGTTTGAATACGTGGCTGGTTACACTTACAAGTATGAGATGCTTGACAAGGCAACAAATCATTTTGATCCTGCAAACAAACTAGGGGAGGGTGGAGCTGGTTCTGTGTTCAAAGGAATACTACCTCATGGGAAGATTGTTGCTGTAAAGCGACTGTTCTTTACAACACGACAGTGGACGGATGGATTCTTCAATGAGGTGAATTTGATAACAGGGATCAGGCACAAGAATCTGGTGAAACTTTTAGGGTGTAGTATTGAAGGTCCTGAAAGTCTCTTGGTTTATGAGTTTGTGTCAAATGGGAGTCTTGATCAAATACTTTTTGGTAAGGACTCAAGAATTGTTTTGACATGGAAGCAACGTTTTAATATCATATGTGGTGTAGCTGAGGCCCTGGCATACCTTCATGGAGGTGCTCAATCTAAGATTATTCACAGGGACATTAAGTCCGCGAACATCTTGCTTGATCAGAATCTTAATCCGAAAGTTGCTGATTTTGGTCTGGCTCGTTTTGTTACCGAAAATAGAAGTCATGTTACCACGGGAGTCGCCGGAACATTGTAA 1515 0.4389 MQDLKPLITYAFLIMCSLLLSPKLAAASSSDNFNILDEVFIQCGTTEYPDLDPTKIARIFMVLMDMISTEIEKQGWSTESLINPLTQIFALGECRSDLNSSICLKCFHNAREHLSQCLPKVAGRVFMDGCFLRYDNYSFFNEALDKKYDSSVCIKSPLKEKMESDSNATIQYGFQEKVGRAVLNVTETASGGAVHKFAVNEDSKDVFALAQCWHTLDREGCERCLKRAGRKLNDCIIVNDEGKSMLAGCFLKYSTRKFYAEEFNENAVKETDVNANNKVIIASLSSAFAVTLMIVACVIMKRKKALSCTAGTDDSTKMFEYVAGYTYKYEMLDKATNHFDPANKLGEGGAGSVFKGILPHGKIVAVKRLFFTTRQWTDGFFNEVNLITGIRHKNLVKLLGCSIEGPESLLVYEFVSNGSLDQILFGKDSRIVLTWKQRFNIICGVAEALAYLHGGAQSKIIHRDIKSANILLDQNLNPKVADFGLARFVTENRSHVTTGVAGTL 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2g00018 504 Gene3D Transferase(Phosphotransferase) domain 1 415 504 - -
Stsc2g00018 504 ProSiteProfiles Gnk2-homologous domain profile. 36 139 IPR002902 -
Stsc2g00018 504 Gene3D - 37 139 IPR038408 -
Stsc2g00018 504 Gene3D - 157 258 IPR038408 -
Stsc2g00018 504 ProSiteProfiles Gnk2-homologous domain profile. 156 258 IPR002902 -
Stsc2g00018 504 Pfam Protein kinase domain 342 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc2g00018 504 SUPERFAMILY Protein kinase-like (PK-like) 317 503 IPR011009 -
Stsc2g00018 504 Gene3D Phosphorylase Kinase; domain 1 300 414 - -
Stsc2g00018 504 SMART serkin_6 339 501 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc2g00018 504 FunFam Os07g0541700 protein 415 503 - -
Stsc2g00018 504 FunFam Cysteine-rich receptor-like protein kinase 2 301 414 - -
Stsc2g00018 504 ProSiteProfiles Protein kinase domain profile. 339 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc2g00018 504 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 90 504 - -
Stsc2g00018 504 Pfam Salt stress response/antifungal 167 255 IPR002902 -
Stsc2g00018 504 Pfam Salt stress response/antifungal 85 137 IPR002902 -
Stsc2g00018 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2g00018 Stsc-Chr2 116719 118779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2g00018 13 504 Receptor kinase-like Gene Family AT5G40380 44.356 4.10e-130 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc2g00018 Pkinase 3.4e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2g00018 - - ahf:112722338 757.288