Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2g00004 ATGAATCTAAGCCTCAACCAACTCTCCGGCGACATTCCAAGGGAGTTCTCGAACTTGGCGAAGCTCGGAGTCTTGGACATTTCTCACAACGCTATCACTGGAAACCTCCAATATCTCGCTGGTTTGCAAAATCTCGTGGTGCTTAACGTCTCGCACAACAGATTCTCAGGGCGCGTCCCGGACACTCCGTTCTTCACGAAGCTTCCAATTAGCGTGCTTGAAGGGAACCCCGCGCTGTGCTTCGCCGGAAACCAGTGCTCCGGTGACGGCAGCGGTGCCGGAAAGTCGTCACGTCGGGCAAGGGAGGCGCGCGTAGCGATGGTGGTCCTGTTGAGTATAGCATGCGCTCTGCTCATGGCGGCGCTATACGTCGTCGTCTCTGCCAAACGACGGGGGGACCGTGAAAACGACGTGGAAATGGATGGAAAGGATAGCGACGGCACAGACATGGCCCCACCCTGGGAAGTAACACTTTACCAGAAACTCGATTTGTCGATTGCTGACGTGGCAAAATGCCTCTCCCCCAGCAACGTGATAGGCCACGGCCGATCCGGCGTCGTTTACAAGGTGAACATGCCTGGAACGGGGCTGACCATCGCCGTAAAGAAGTTCAAAGCGTCGGAGAAATTCTCGGCGTCGGCGTTCTCTTCGGAGATTGCCACGCTGGCAAGGATCCGGCACCGTAACATAGTGCGGTTACTTGGTTGGGGCGCGAACCGTAGAACGAAGTTACTGTTTTACGATTATTTACCTAACGGTAACTTAGACACGCTGTTGCACGAGGGGTGCACAGGGTTAATAGAGTGGGAGACGCGGCTCAAGATAGCATTGGGCGTGGCTGAAGGCCTAGCTTACTTGCACAACGATTGCGTCCCTGCAATCTTGCACCGTGACGTTAAAGCCCTCAACATTCTGTTAGGCGACAGGTATGAACCCTGTTTGGCTGATTTCGGATTCGCACGCTTCTTGGAAGAAGATCATCCTTCTTTTTCCGTTAATCCACAGTTCGCTGGTTCTTACGGTTACATTGCTCCTGAGTATGGTTGCATGCTAAAAATAACAGAGAAGAGCGATGTTTACAGCTTTGGGGTGGTGTTGCTAGAGATACTAACAGGAAAAAGGCCAGTGGATCCATCATTCCCAGAAGGAGAACACGTAATCCAGTGGGTGAGGGAGCACCTTAAGAGTAAGAAGGACCCAATAGAGGTTCTTGATGCGAAGCTACAAGGGCACCCAGACACACAGATTCAAGAAATGCTGCAGGCGCTTGGGATATCTCTATTGTGCACCAGCAACCGTGCGGAGGATCGGCCGACAATGAAGGATGTGGCAGCATTATTGAGAGAGATTAGACACGAGGAGGGCCCACCAGCTGAGGCCCACAAGCCCAAAATAAACACGGAAGCCTCGTCGTATTCGTCGTCGTCCTTGTCCTCTGCGGCGGTGACCCCGGCTCAGTTATTGCTGCTTCAATCAGCCTCTCATTCCTCGTCCTCCCTTGCATATTCCTCTTCCTCCGTAGCCGCGGGGTACCACCACAACCCACCAAGGAATTATCAATCATGA 1566 0.53 MNLSLNQLSGDIPREFSNLAKLGVLDISHNAITGNLQYLAGLQNLVVLNVSHNRFSGRVPDTPFFTKLPISVLEGNPALCFAGNQCSGDGSGAGKSSRRAREARVAMVVLLSIACALLMAALYVVVSAKRRGDRENDVEMDGKDSDGTDMAPPWEVTLYQKLDLSIADVAKCLSPSNVIGHGRSGVVYKVNMPGTGLTIAVKKFKASEKFSASAFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLDTLLHEGCTGLIEWETRLKIALGVAEGLAYLHNDCVPAILHRDVKALNILLGDRYEPCLADFGFARFLEEDHPSFSVNPQFAGSYGYIAPEYGCMLKITEKSDVYSFGVVLLEILTGKRPVDPSFPEGEHVIQWVREHLKSKKDPIEVLDAKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRHEEGPPAEAHKPKINTEASSYSSSSLSSAAVTPAQLLLLQSASHSSSSLAYSSSSVAAGYHHNPPRNYQS 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2g00004 521 ProSitePatterns Protein kinases ATP-binding region signature. 179 203 IPR017441 GO:0005524
Stsc2g00004 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 294 306 IPR008271 GO:0004672|GO:0006468
Stsc2g00004 521 Gene3D Phosphorylase Kinase; domain 1 154 249 - -
Stsc2g00004 521 SUPERFAMILY L domain-like 2 81 - -
Stsc2g00004 521 FunFam Putative LRR receptor-like serine/threonine-protein kinase 1 85 - -
Stsc2g00004 521 ProSiteProfiles Protein kinase domain profile. 173 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc2g00004 521 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 2 452 - -
Stsc2g00004 521 Pfam Protein kinase domain 177 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc2g00004 521 Gene3D Ribonuclease Inhibitor 1 91 IPR032675 -
Stsc2g00004 521 Gene3D Transferase(Phosphotransferase) domain 1 250 473 - -
Stsc2g00004 521 SUPERFAMILY Protein kinase-like (PK-like) 162 447 IPR011009 -
Stsc2g00004 521 SMART serkin_6 173 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc2g00004 521 FunFam LRR receptor-like serine/threonine-protein kinase 162 249 - -
Stsc2g00004 521 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 250 465 - -
Stsc2g00004 521 MobiDBLite consensus disorder prediction 452 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2g00004 Stsc-Chr2 30581 33879 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2g00004 1 62 Receptor kinase-like Gene Family AT5G56040 39.683 8.19e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc2g00004 Pkinase 1.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2g00004 - - adu:107493731 899.812