Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc29g00016 ATGATGTATCACAGTATTTATTGGATAAATTCAAATGTGTCCCTACTTTTCTACCCTCTGATGTTTTGGCAAAGTTTTATGACGGCTTCTGTAAAAGGCAGTTATGGCCGCTTTTTCATTACATGTTACCGTTTTCAACTGCTAAGAGCCACCGTTTTGATCGATCTTTGTGGGAAGCCTATGTGCTGGCAAATAAGCTATTTTTCCAAAAGTCGTATGCTGGGTTTGGAGTATCAGTCAAAGAGAGGTTATCTAGGATTGGAATATTATGGAAGAACTATCAGTATTAAGATTATGCCAGTAGGGATTCACATGGGTCGAATTGAAACTGTTATGAAGATGGCAGATGAGGAGTGCAAGGCAGGGGAGCTGAAACAGCAATTTGAAGGGAAAACAATCTTGCTTGGTGTTAACGATATGGACATTTTTAAAGGTATTAATTTGAAGATTTTGGCTATGGAGCAAATGCTCAAGCAACACCCCAAATGGCAAGGAAGAGCTGTTCTGGTCCAGATTGTAAATCCTGCAAGGGGTAAAGGTATACATCTAGACGTAATACGTGCTGAAATAGAAGAAAGCTGCAGCAGGATTAATAGAGTGTATGGACAACCTGGTTATGAACCGATTAATTTTATTGATAGATCAGTTTCAATTGCTAAAAAAGTTGCTTATTACAGCCTTGCCGAGTGTGTTATTGTCACGGCTGTGAGGGATGGGATGAACCTGACTCCTTATGAATATATTGCTTGCAGACAGGGAATATCTGGTAATGACTCGTGTTTCGATCTTAGAAGCCCAAAGAAGAGTCTGCTAGTAATATCAGAATTTATTGGGTGTTCTCCATCACTCAGTGGGGCTATCCGTGTCAATCCATGGAATGTTGAGTCCACTGCAGAAGCAATGAATGAGGCTATCTCAATGAGTGATGGAGAGAAGCAGTTGCAGCATGAAAAGCACTACCGGTATGTTAGCACACATGATGTGGCATATTGGTCACGTAGTTTCTTGCAAGACATGGAGAGGGCATGCGCTGACCTTCTAAGGAAACGATGTTGGGGAATTGGTCTTAGTTTTGGATTTAGAGTTGTAGCACTTGACCCTAATTTTCGTAAGCTCTCAATTGATGCTATGGTTTCATCTTACAAGAGGGCAAGGAGTAGGGCCATTTTGTTGGACTATGATGGTACGGTGATGCCACAAAATTCCATTAGTAAAAGTCCAAGCAATGAGGTTCTCTCTCTTTTGGACACACTCTGTGCAGACCCCAGAAATGTAGTTTTCATTGTTAGTGGAAGGGGGAGGAAAAACTTAAGTGATTGGTTTTTACCCTGTAAAAATATTGGAATTGCCGCAGAACATGATTACTTTTTGAGATGGTCGCAAAGTGCAGAATGGGAAATTTGTGGTAAGAACATGGACTTTGGATGGATGCAGATTGCTGAACCTGTGATGAAACTCTACACAGAGGCAACTGATGGTTCCAACATTGAAACAAAGGAAAGTGCTTTGGTCTGGCAATACTGGGATGCAGATCTTGGTTTTGGATCTTCTCAAGCTAAGGAAATGTTAGATCATCTAGAAAGTGTTTTAGCAATGAGCCAGTTGCTGTGA 1611 0.4097 MMYHSIYWINSNVSLLFYPLMFWQSFMTASVKGSYGRFFITCYRFQLLRATVLIDLCGKPMCWQISYFSKSRMLGLEYQSKRGYLGLEYYGRTISIKIMPVGIHMGRIETVMKMADEECKAGELKQQFEGKTILLGVNDMDIFKGINLKILAMEQMLKQHPKWQGRAVLVQIVNPARGKGIHLDVIRAEIEESCSRINRVYGQPGYEPINFIDRSVSIAKKVAYYSLAECVIVTAVRDGMNLTPYEYIACRQGISGNDSCFDLRSPKKSLLVISEFIGCSPSLSGAIRVNPWNVESTAEAMNEAISMSDGEKQLQHEKHYRYVSTHDVAYWSRSFLQDMERACADLLRKRCWGIGLSFGFRVVALDPNFRKLSIDAMVSSYKRARSRAILLDYDGTVMPQNSISKSPSNEVLSLLDTLCADPRNVVFIVSGRGRKNLSDWFLPCKNIGIAAEHDYFLRWSQSAEWEICGKNMDFGWMQIAEPVMKLYTEATDGSNIETKESALVWQYWDADLGFGSSQAKEMLDHLESVLAMSQLL 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc29g00016 536 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 386 503 - -
Stsc29g00016 536 Pfam Trehalose-phosphatase 390 531 IPR003337 GO:0003824|GO:0005992
Stsc29g00016 536 Gene3D - 470 526 - -
Stsc29g00016 536 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 71 531 IPR001830 GO:0003824|GO:0005992
Stsc29g00016 536 Gene3D - 389 469 IPR023214 -
Stsc29g00016 536 Pfam Glycosyltransferase family 20 69 340 IPR001830 GO:0003824|GO:0005992
Stsc29g00016 536 SUPERFAMILY HAD-like 387 528 IPR036412 -
Stsc29g00016 536 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 16 343 - -
Stsc29g00016 536 Gene3D Glycogen Phosphorylase B; 106 324 - -
Stsc29g00016 536 FunFam Alpha,alpha-trehalose-phosphate synthase 111 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc29g00016 Stsc-Chr29 97841 102648 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc29g00016 44 531 Trehalose Biosynthesis Gene Families AT1G06410 72.857 0.0 748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc29g00016 K16055 - gmx:100800847 822.772