Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc298g00013 ATGTCCAACCATTCCTTCTTCTCATTGCTCATTCTTTTGCTCTTATTCACCATTTCAGCCTCATCAGCACATGATGAACCATTCACTTCCACCTCAGGGGATACTAATAATGTCTACACTCTCAAAGTCTCAACATTAGAAAACACCAACTTGGATAATCTCCTTTCCTTTGCTTACTACCAAAAAACCTGTCCACACTTTGAGTCCATTCTCCACAACAAGCTCAAGCAATGGATTCAAAATGATTATACTTTAGCTGCAGCTCTCATGAGGTTGCATTTCCATGATTGTTCTGTCAGGGGATGTGATGGTTCTATCCTATTGAACCATGAAGGAAGTGAGAGGAGAGCAAAAGCAAGCAAGACACTGAGAGGGTTTGAAGTGATTGATGATATAAAGGAAGAGCTGGAGAAGCATTGTCCCAAGACAGTTTCATGTGCAGACATCTTGACAGCTGTTTCAAGAGATGCCACTGTTCAATTGGGTGGTCCATATTGGTCAGTTCCCTATGGAAGGAAAGATGGATTCTTCTCCATTGCCAATGAAGCTGATCAATTGGTTCCCATGGGCCATGAAAACATCACTTCCTTGCTTGAGTTTATCCAATCCAAAGGCATGAATGTCCTTGACTTAGTTGTTCTCTCAGGGGCTCATACTATTGGAAGGGCTTCATGTGGATCCATTCAGAATAGGCTATACAGCTATGAAGGAACTGGGAAACCAGACCCTTCCATGAATCCCAAGTACCTCAACTTTCTGCAAAGAAAGTGTAGATGGGCTTCAGAGACTTCTCCCATTGTTTCTGCACTGGCTTCTGTACCCTACATCTTCAAGCACCAGTTTGCTGTGTCAATGGCAAAGCTTGGCAATGTTGGAGTTCTCACTGGTCAGGATGAAGGGGAGATTAGGACCAACTGTAGTTTTGTTAATG 931 0.4296 MSNHSFFSLLILLLLFTISASSAHDEPFTSTSGDTNNVYTLKVSTLENTNLDNLLSFAYYQKTCPHFESILHNKLKQWIQNDYTLAAALMRLHFHDCSVRGCDGSILLNHEGSERRAKASKTLRGFEVIDDIKEELEKHCPKTVSCADILTAVSRDATVQLGGPYWSVPYGRKDGFFSIANEADQLVPMGHENITSLLEFIQSKGMNVLDLVVLSGAHTIGRASCGSIQNRLYSYEGTGKPDPSMNPKYLNFLQRKCRWASETSPIVSALASVPYIFKHQFAVSMAKLGNVGVLTGQDEGEIRTNCSFVN 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc298g00013 310 ProSitePatterns Peroxidases active site signature. 86 97 IPR019794 GO:0004601
Stsc298g00013 310 Gene3D - 289 310 - -
Stsc298g00013 310 PRINTS Plant peroxidase signature 88 108 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc298g00013 310 PRINTS Plant peroxidase signature 64 83 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc298g00013 310 PRINTS Plant peroxidase signature 209 221 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc298g00013 310 PRINTS Plant peroxidase signature 124 137 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc298g00013 310 PRINTS Plant peroxidase signature 162 177 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc298g00013 310 PRINTS Plant peroxidase signature 143 153 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc298g00013 310 ProSiteProfiles Plant heme peroxidase family profile. 54 310 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc298g00013 310 FunFam Peroxidase 58 199 - -
Stsc298g00013 310 Gene3D Peroxidase, domain 2 188 262 - -
Stsc298g00013 310 Pfam Peroxidase 73 269 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc298g00013 310 SUPERFAMILY Heme-dependent peroxidases 55 310 IPR010255 GO:0004601|GO:0006979|GO:0020037
Stsc298g00013 310 PANTHER PEROXIDASE 25-RELATED 16 260 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc298g00013 310 ProSitePatterns Peroxidases proximal heme-ligand signature. 210 220 IPR019793 -
Stsc298g00013 310 Gene3D Peroxidase, domain 2 263 288 - -
Stsc298g00013 310 Gene3D - 59 187 - -
Stsc298g00013 310 CDD secretory_peroxidase 55 309 IPR033905 GO:0004601|GO:0042744
Stsc298g00013 310 PRINTS Haem peroxidase superfamily signature 210 225 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc298g00013 310 PRINTS Haem peroxidase superfamily signature 86 100 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc298g00013 310 PRINTS Haem peroxidase superfamily signature 162 174 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc298g00013 310 PRINTS Haem peroxidase superfamily signature 144 161 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc298g00013 Stsc-Chr298 56220 57418 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc298g00013 51 310 Peroxidase AT1G30870 54.333 8.93e-111 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc298g00013 K00430 - gmx:100798229 444.506