Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc298g00012 ATGGATGCGACGAACAACCTGAGCGATGACTTCAAGATTGGCTCAGGGGGTTCAGGGACAATCTACAAAGCTGAATTGGCCAATGGAGAGACAGTGGCTGTGAAGAAGATTTCAGCAAAAGATGATTTTCTGCTGAACAAAAGCTTCATAAGAGAAGTTAAGACACTTGGGAGGACAAGGCACAGGCACCTTGTGAAGCTTATAGGTTACTGTGGCAATAATGTAAACAAAGGAGCAGCTTGGAATCTGTTGATATATGAGTATATGGAGAATGGGAGTGTATCGGATTGGCTTCATGGGAAGCCAGCCAAGGGCAGCAAAGTGAAGAGGAGCCTTGACTGGGAGACAAGGTTCAGAATTGCAGTGGGACTAGCTCAAGGAGTGGAGTACCTCCACCATGATTGTGTGCCAAAGATCATTCACAGGGATATCAAATCCAGCAACATATTGCTAGATTCCAAAATGGAAGCACACTTGGGAGATTTTGGACTTGCAAAAGCAATCTTTGAGAATTATGACTCCAGAACCGAGTCTAATTCTCTGTTTGCTGGATCTTACGGCTACATGGCTCCAGAGTACGGATACTCCCTACATGCAACAGAAAAGAGTGATGTCTACAGCATGGGAATTGTGCTTATGGAGCTTGTTAGTGGTAAAACACCAACAGATGAAACTTTTGGAGCAGATATGGATATGGTGAGATGGGTGGAGATGCACCTGGATTTGCATGGCGCTGTGCGCGAGGAAGTGATAGATCCTGAGCTGAAACCTCTGTTGCCTGCTGAAGAGTTTGCTGCATTCCAAGTTCTTGAGGTAGCATTGCAGTGCACCAAAACTACACCTCAGGAGAGGCCATCTTCCCGGAAAGTATGTGATCTTCTCCTCCATGTATTCAACAACAGAAGAGCCCAGTTTGATAAGATGAATTTGGATCAGTACAAATTCAAGTGA 951 0.4501 MDATNNLSDDFKIGSGGSGTIYKAELANGETVAVKKISAKDDFLLNKSFIREVKTLGRTRHRHLVKLIGYCGNNVNKGAAWNLLIYEYMENGSVSDWLHGKPAKGSKVKRSLDWETRFRIAVGLAQGVEYLHHDCVPKIIHRDIKSSNILLDSKMEAHLGDFGLAKAIFENYDSRTESNSLFAGSYGYMAPEYGYSLHATEKSDVYSMGIVLMELVSGKTPTDETFGADMDMVRWVEMHLDLHGAVREEVIDPELKPLLPAEEFAAFQVLEVALQCTKTTPQERPSSRKVCDLLLHVFNNRRAQFDKMNLDQYKFK 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc298g00012 316 ProSitePatterns Protein kinases ATP-binding region signature. 13 36 IPR017441 GO:0005524
Stsc298g00012 316 Gene3D Phosphorylase Kinase; domain 1 1 88 - -
Stsc298g00012 316 SUPERFAMILY Protein kinase-like (PK-like) 3 294 IPR011009 -
Stsc298g00012 316 Gene3D Transferase(Phosphotransferase) domain 1 89 314 - -
Stsc298g00012 316 FunFam Leucine-rich repeat receptor-like protein kinase 89 311 - -
Stsc298g00012 316 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 2 295 - -
Stsc298g00012 316 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Stsc298g00012 316 PIRSF TyrPK_CSF1-R 28 115 - -
Stsc298g00012 316 PIRSF TyrPK_CSF1-R 86 226 - -
Stsc298g00012 316 PIRSF TyrPK_CSF1-R 259 316 - -
Stsc298g00012 316 SMART serkin_6 7 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc298g00012 316 ProSiteProfiles Protein kinase domain profile. 7 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc298g00012 316 Pfam Protein kinase domain 11 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc298g00012 Stsc-Chr298 48202 49447 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc298g00012 2 297 Receptor kinase-like Gene Family AT5G65700 46.465 2.64e-77 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc298g00012 Pkinase 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc298g00012 - - aip:107632121 618.231