Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc298g00002 ATGGCTAACAGAGCTCAAATTCCTACAAAAAGTTCAGCTCTTATTGCCATGATTGCAGATGAGAACGGCAAAGGATATAAGAACTACGAGGATACTGTCGTTGGATTTCTGTTGGCTGGAGTGGGAAATGTTGACATCCGTAGAAAGACAAATTACCTCATTGTGGATTCAAAAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTCACAACAAGGGAGGATATTGCAATTGTGCTGATTAGCCAATATGTTGCAAATATGATAAGGTTTCTGGTTGATAGTTACAATAAGCCTGTTCCTGCGATTCTTGAAATCCCTTCCAAAGACCATCCTTATGATCCTGCACATGATTCAGTTCTTTCCCGAGTAAAGTATCTCTTTTCTACCGAATCAGTGGCATCCGGGAGACGCTAA 420 0.4 MANRAQIPTKSSALIAMIADENGKGYKNYEDTVVGFLLAGVGNVDIRRKTNYLIVDSKTTVKQIEDAFKEFTTREDIAIVLISQYVANMIRFLVDSYNKPVPAILEIPSKDHPYDPAHDSVLSRVKYLFSTESVASGRR 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc298g00002 139 Pfam ATP synthase (F/14-kDa) subunit 30 125 IPR008218 GO:0034220|GO:0046961
Stsc298g00002 139 NCBIfam V-type ATPase subunit F 29 133 IPR005772 GO:0033180|GO:0046961|GO:1902600
Stsc298g00002 139 SUPERFAMILY AtpF-like 30 108 IPR036906 GO:0034220
Stsc298g00002 139 PIRSF V-ATP_synth_F 3 132 IPR005772 GO:0033180|GO:0046961|GO:1902600
Stsc298g00002 139 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT F 1 135 - -
Stsc298g00002 139 Gene3D ATPase, V1 complex, subunit F 9 131 IPR036906 GO:0034220
Stsc298g00002 139 FunFam V-type proton ATPase subunit F 9 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc298g00002 Stsc-Chr298 6074 9070 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc298g00002 1 135 Primary Pumps ATPases(2) AT4G02620 82.222 1.46e-78 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc298g00002 K02151 - gmx:100780523 239.195