Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc297g00004 ATGCCAGAACCTTCATCGTCTTTCAAAGTTGTTCAACTTTGTTCTGTTTCACCACCGCCACTAAATGGAACAACAACTTCTTCTTCTTCTTCTTCTTCTTCAATCTTTATGCCACTCACCTTCTTTGACATCATATGGCTACGGTTCCCACCCGTTGAGCGTCTTTTCTTCTACAAATTCCCAAACTACCCTTCTTCTAATTCATTCTTCTATGACTCTGTCCTTCCAAATCTCAAACACTCTCTTTCCCTCACACTCCAACACTTCCTTCCCCTCGTTGGTAACATTATTTGGCCTTCAGATTCTCCCAAACCAGTGATTCATTATGTCCCTAATCAAGATTCTGTTACCTTAACCATAGCAGAGTCCAATGATGATGCTGCTAACGTTTTTGAGCAACTTTGTTCTAATTCATGTGATGCTTCACAACGTTATTTCTTGGTACCCCAATTGGCCATTTCTCATGAAAAAGCTTCTTTGTTAGCATTACAAGTAACTTTGTTCCCAAAGTTTGGATTTTGCATTGGAATCACAACGCACCATGCAGCCATGGATGGAAAGTCTTCAACTATGTTCATGAAAGCGTGGTCTTACACATGCTCCAAGCTTTTAGAATCACCATCATCATTACCATTACCAGAGAATCTTACACCGTTTTTGGATCGGTCGGTGATAAGGGACCCAACAAAAATCGGTGAAGGTTATGCAGATTCATGGTTGAATCATGGTGGAACAAACAATAACAACCGAAGTCTCAAAGTGTGGGATTCCCCTAATGAGTTTGCAAAAGAAGGATATGGGGTTAAAGCTTTGTTTGAATTGAGCCCCACACAGATCATGAAGCTCAAAGAACATGCAAAATCCAAGATGGGAGGAACAAAAAGTGTGAAACTTTCAACTTTTTCAGTTACTTGTGCTTATGTATTATCGTGTTTGGTGAAAACAGAAGAGCAACAGTTATTGGAAACCGTGGTTAAAAAAGTGTACTTCATCTTCAGTGTGGATTGCAGAACAAGGTTAGAGCCTCCAATTGTTTCAACATATTTTGGGAATTGCATTGCTGGGGAAAAGGTTGAGGCAGAGATAGAAGGGTTATTGTTGGGAAACAACATTATTAATGATGGATTCATGGTTGCTTTAGAGGCAATTAGTGAAGGATTGAAAAGGGTTGAAGATGGGATAGAGATGAATGGAGCAGAGACTTGGCTTTCGGATATGCTTAGTTTTGTTGGAGGAGCAAAGATATATTCCATGGCTGGATCTCCAAGGTTTGGAGTTTATGATGTTGATTTTGGTTATGGAAGGCCTGAGAAAGTGGATATGACTTCAACTGATAAGACAGGAGCTTTTTCTCTTTCGGAGAATAAAGATAACAATGGTGGAATACAGATTGGGTTGGCATTGAAAATAAGTGACATGAAAGCTTTCTCTACCTTGTTCCATCAAGGACTTCAATCCTTGTAA 1464 0.3969 MPEPSSSFKVVQLCSVSPPPLNGTTTSSSSSSSSIFMPLTFFDIIWLRFPPVERLFFYKFPNYPSSNSFFYDSVLPNLKHSLSLTLQHFLPLVGNIIWPSDSPKPVIHYVPNQDSVTLTIAESNDDAANVFEQLCSNSCDASQRYFLVPQLAISHEKASLLALQVTLFPKFGFCIGITTHHAAMDGKSSTMFMKAWSYTCSKLLESPSSLPLPENLTPFLDRSVIRDPTKIGEGYADSWLNHGGTNNNNRSLKVWDSPNEFAKEGYGVKALFELSPTQIMKLKEHAKSKMGGTKSVKLSTFSVTCAYVLSCLVKTEEQQLLETVVKKVYFIFSVDCRTRLEPPIVSTYFGNCIAGEKVEAEIEGLLLGNNIINDGFMVALEAISEGLKRVEDGIEMNGAETWLSDMLSFVGGAKIYSMAGSPRFGVYDVDFGYGRPEKVDMTSTDKTGAFSLSENKDNNGGIQIGLALKISDMKAFSTLFHQGLQSL 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc297g00004 487 Gene3D - 8 250 IPR023213 -
Stsc297g00004 487 PANTHER - 8 486 - -
Stsc297g00004 487 Pfam Transferase family 29 478 - -
Stsc297g00004 487 Gene3D - 267 487 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc297g00004 Stsc-Chr297 25835 27298 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc297g00004 43 482 Monolignol Biosynthesis Gene Families AT5G48930 26.106 1.48e-20 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc297g00004 - - ahf:112797053 798.89