Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc296g00006 ATGTCCATAACCGAGGAAACTCACAGACCCGACCCATCCGATAAACGGGTCTCTAGAAAACGTTCCCGCCAGCCCGACACCGCATTCCGCGGCGTTCGAAAACGAAGCTGGGGACGCTACGTCTCCGAGATTAGAATGCCCGGCCAGAAAACACGCGTATGGCTCGGCTCATTCGGCTCCCCTGAGATGGCGGCTCGTGCATACGACTCCGCCGCTTTCTTCCTCAAAGGAAACTCCGCCACTCTCAATTTCCCCGACCTCGTTCACTCGCTCCCTCGCCCTCTCTCCTCCTCCAGGCGTGACATACAATCGGCGGCGGCCAAAGCGGCGCTCGAGGTTGCGGATGCACGGATCGGGCGTGAACCGACCCGGTCCCCCGTGAAGGCGGATTCGGCGGAGTGGTGGGAAGGTTTGTTGGGAGAAGAGGAAGAGTCGGTTTGGAGAACGACGTCGTTTGAAGATTTGAAGGAATGTGGGCTTATGAGTATGAGTCCAGTTGCAGAATTGACATGGAACGAAGTCTTCAATTCCAATGATGACCTTCTCTTATTGTCCTAA 558 0.5627 MSITEETHRPDPSDKRVSRKRSRQPDTAFRGVRKRSWGRYVSEIRMPGQKTRVWLGSFGSPEMAARAYDSAAFFLKGNSATLNFPDLVHSLPRPLSSSRRDIQSAAAKAALEVADARIGREPTRSPVKADSAEWWEGLLGEEEESVWRTTSFEDLKECGLMSMSPVAELTWNEVFNSNDDLLLLS 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc296g00006 185 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Stsc296g00006 185 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Stsc296g00006 185 FunFam Ethylene-responsive transcription factor 2 27 86 - -
Stsc296g00006 185 Gene3D AP2/ERF domain 28 86 IPR036955 GO:0003700|GO:0006355
Stsc296g00006 185 CDD AP2 29 87 IPR001471 GO:0003700|GO:0006355
Stsc296g00006 185 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Stsc296g00006 185 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Stsc296g00006 185 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 126 - -
Stsc296g00006 185 MobiDBLite consensus disorder prediction 1 28 - -
Stsc296g00006 185 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677
Stsc296g00006 185 Pfam AP2 domain 28 77 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc296g00006 Stsc-Chr296 54276 55392 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc296g00006 13 110 AP2-EREBP Transcription Factor Family AT5G11590 57.143 2.50e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc296g00006 AP2 8.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc296g00006 K09286 - gmx:100783790 175.252