Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc294g00007 ATGGAGGACGATGAGCTACTGCTGCTGTTGTTCCATGGTGGCCGCCGGCAGAGGAAAAGGTCTGCGCTGCTTCCTCCTCTGTTAATGGTGGTGCTGCTGTTCGTGTTTTCTCCGGTTGCTCACCCGCTCACTGAAGAAGGTCAAGCATTGATGTCGATCAAGGCTTCCTTCATCAATATGGCAGATGTTCTGCATGACTGGGACGATGTCCACAATGACGATTTTTGCTCGTGGCGCGGTGTCCTCTGTGACAATTCTAGCTTCACTGTGATTTCTCTGAACTTGTCATGCTTGTTGCTGGGAGGGGAAATATCACCGGCCATTGGTGATTTAAGAAACTTGCAATCCATAGATCTGACGGGGAACAAATTATCCGGTCAAATACCTGATGAAATTGGCAACTGTGCTGATCTTACTATTCTGGATTTGACTGACAATCAGCTATATGGTGATATACCTTTCTCCATATCAAAGCTGAAACAACTTGAGTTTTTGAGTTTGAAGATGAATCAGTTGACTGGTCCCATCCCCACAACATTATCCCAAATCCCAAACCTCAAACACCTCGATCTTGCACAAAACAAGCTCATTGGAGAGATACCTAGACTACTCTATTGGAATGAAGTCTTGCAGTACCTTGGACTGCGAGGGAACATGTTGACTGGAACTTTGTCTCCTGATATCTGTCAATTGACTGGTTTGTGGTACTTTGATGTACGAGGCAATAACTTGACTGGCACTATACCTGAGAGCATTGGGAACTGTACAAGTTTTGAAATCTTGGACATCTCATATAATCAGATTTCTGGAGAGATTCCCTATAATATTGGATTTCTTCAAGTTGCTACATTGTCACTCCAAGGAAATAGACTAACTGGGAAGATTCCAGAAGTAATTGGCTTAATGCAAGCCCTTGCAATTCTGGATTTGAGTGAGAATCAGTTAGTAGGTCCTATCCCACCAATACTGGGCAATTTGTCCTTCACCGGCAAGCTGTACCTTCATGGAAACAAGCTTACTGGTCCAATACCTGCAGAACTTGGAAACATGTCGAAATTGAGCTACCTGATATTAAATGACAATCAACTGGTGGGTAGAATTCCCAATGAAATTGGAAAACTTGAACTCCTTTTTGAACTGAATCTTGCCAATAACCATCTTGAAGGGTCTATTCCACATACCATAAGCTCCTGTACCGCATTGAATCATTTTAATGTTCATGGAAATCAATTAAGCGGTTCCATCCCACTTAGCTTCCGCAGCCTTGAGCGTTTGACCTACCTCAATCTCTCTGCTAACAATTTCAAAGGGAGTATACCTACTGATTTGGGCCACACCATAAATCTTGATACACTGGATCTTTCTAGCAATCATTTTTCTGGGCATGTACCTGCATCTATTGGCTATTTGGAGCACCTTTTGACACTGAACCTGAGTCATAACGAGTTTGATGGTCCCTTGCCTGCGGAATTTGGGAATCTAAGAAGCATACAAATCATTGATATGTCCTTCAACAATCTGTCGGGTACCATTCCTCCAGAGTTTGGCCAACTGCAGAACCTTATGTCTCTGGTTTTGAACAACAACGACTTGGATGGGAAGATTCCTGATCAGCTTAGTAATTGTTTCAGTCTTACCTCTTTGAACTTCTCCTATAATAACTTTTCTGGAGTTATTCCTTCTATGAAGAACTTTTCTCGGTTTTCAGCTGAAAGCTTCGTTGGAAATCCTTTACTATGTGGTGATTGGTTAGGATCTATTTGTCGTCTTCACATTCCAAAATCCAGAGTGTTTGTCTCAAGAATTGCAGTTATATGTCTTGCTCTGGGTGTGATCACATTATTGGCTATGGTAACAGTTGCTATCCATAAATCAAACCAATCGAAGCAATTGGTGAAAGGTTCCGGCAGAATTGGCCAAGGGCCACCTAAACTTGTAATTCTTCATATGGATATGGCTATCCACACCTTAGATGATATAATGAGAAGTACGGAGAATCTCGGTGAGAAATATGCTATAGGGTATGGTGCTTCTAGTACTGTGTACAAATGTGCTTTGAAGAACTCCCGGGCAATTGCGGTTAAGCGATTGTACAACCAGCATCCACATAACCTGCAGGAGTTTGAGACAGAACTTGAAACAATAGGCAGCATTAGGCACAGGAATCTTGTCACGTTGCATGGTTATGCACTAACACCCTATGGGAATCTCCTGTTCTATGATTATATGGCCAATGGTTCTTTGTGGGATCTTCTTCATGGTCCGCTGAAGGTGAAACTAGACTGGGAGACACGCTTGAGAATTGCAGTTGGAGCTGCTGAAGGACTTGCCTATCTCCATCATGACTGCAACCCTCGAATTGTTCACAGGGACATTAAGTCTTCAAACATCCTACTTGATGAGAATTTCGAGGCACACCTTTCTGACTTTGGAACTGCCAAATCCATCTCAAGTGCAAGAACACACACTTCAACTTATGTTCTTGGAACAATAGGCTATATTGACCCTGAGTATGCCCGGACATCAAGGCTTAACGAAAAGTCAGATGTTTATAGCTTCGGCATTGTTCTACTAGAGTTACTTACAGGAAAGAAAGCTGTGGATAATGAGTCTAACTTGCATCAACTGATATTGTCCAAGGCAGATAACAACACTGTAATGGAGGCTGTGGATCCTGAGGTTTCCATTACCTGCATTGACTTGGCCCATGTGAAGAAAACCTTTCAGCTTGCACTGCTTTGCACAAAACGAAACCCTTCCGAGAGGCCTACTATGCATGAGGTTGCCAGGGTTCTGGTCTCACTACTCCCCGCACCTCCAAGCAAGATCAGCTCCGGCCCTGCAAAGAATGCGGACTATGCACAATTTTTGATTGGGAAGGGACAACAGCAACCAAATGTTGAAGGGCTTCAACCCCAGCAGGATAACAATTCATCAAATGCTCAATGGTTTGTGCGCTTTGGGGATGCTATTTCTAAGAACACTCTCTAG 2991 0.4316 MEDDELLLLLFHGGRRQRKRSALLPPLLMVVLLFVFSPVAHPLTEEGQALMSIKASFINMADVLHDWDDVHNDDFCSWRGVLCDNSSFTVISLNLSCLLLGGEISPAIGDLRNLQSIDLTGNKLSGQIPDEIGNCADLTILDLTDNQLYGDIPFSISKLKQLEFLSLKMNQLTGPIPTTLSQIPNLKHLDLAQNKLIGEIPRLLYWNEVLQYLGLRGNMLTGTLSPDICQLTGLWYFDVRGNNLTGTIPESIGNCTSFEILDISYNQISGEIPYNIGFLQVATLSLQGNRLTGKIPEVIGLMQALAILDLSENQLVGPIPPILGNLSFTGKLYLHGNKLTGPIPAELGNMSKLSYLILNDNQLVGRIPNEIGKLELLFELNLANNHLEGSIPHTISSCTALNHFNVHGNQLSGSIPLSFRSLERLTYLNLSANNFKGSIPTDLGHTINLDTLDLSSNHFSGHVPASIGYLEHLLTLNLSHNEFDGPLPAEFGNLRSIQIIDMSFNNLSGTIPPEFGQLQNLMSLVLNNNDLDGKIPDQLSNCFSLTSLNFSYNNFSGVIPSMKNFSRFSAESFVGNPLLCGDWLGSICRLHIPKSRVFVSRIAVICLALGVITLLAMVTVAIHKSNQSKQLVKGSGRIGQGPPKLVILHMDMAIHTLDDIMRSTENLGEKYAIGYGASSTVYKCALKNSRAIAVKRLYNQHPHNLQEFETELETIGSIRHRNLVTLHGYALTPYGNLLFYDYMANGSLWDLLHGPLKVKLDWETRLRIAVGAAEGLAYLHHDCNPRIVHRDIKSSNILLDENFEAHLSDFGTAKSISSARTHTSTYVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDNESNLHQLILSKADNNTVMEAVDPEVSITCIDLAHVKKTFQLALLCTKRNPSERPTMHEVARVLVSLLPAPPSKISSGPAKNADYAQFLIGKGQQQPNVEGLQPQQDNNSSNAQWFVRFGDAISKNTL 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc294g00007 996 Gene3D Transferase(Phosphotransferase) domain 1 743 943 - -
Stsc294g00007 996 Pfam Leucine Rich Repeat 113 135 IPR001611 GO:0005515
Stsc294g00007 996 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 208 317 - -
Stsc294g00007 996 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 318 591 - -
Stsc294g00007 996 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 481 566 - -
Stsc294g00007 996 Pfam Leucine rich repeat N-terminal domain 45 84 IPR013210 -
Stsc294g00007 996 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 43 207 - -
Stsc294g00007 996 Pfam Leucine rich repeat 379 435 IPR001611 GO:0005515
Stsc294g00007 996 Pfam Leucine rich repeat 138 196 IPR001611 GO:0005515
Stsc294g00007 996 Pfam Leucine rich repeat 448 507 IPR001611 GO:0005515
Stsc294g00007 996 SUPERFAMILY Protein kinase-like (PK-like) 648 932 IPR011009 -
Stsc294g00007 996 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 638 742 - -
Stsc294g00007 996 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 743 942 - -
Stsc294g00007 996 SMART LRR_typ_2 111 135 IPR003591 -
Stsc294g00007 996 SMART LRR_typ_2 518 542 IPR003591 -
Stsc294g00007 996 SMART LRR_typ_2 494 517 IPR003591 -
Stsc294g00007 996 SMART LRR_typ_2 183 207 IPR003591 -
Stsc294g00007 996 SMART LRR_typ_2 231 255 IPR003591 -
Stsc294g00007 996 SMART LRR_typ_2 470 493 IPR003591 -
Stsc294g00007 996 SMART LRR_typ_2 302 326 IPR003591 -
Stsc294g00007 996 SMART LRR_typ_2 422 446 IPR003591 -
Stsc294g00007 996 SMART LRR_typ_2 350 373 IPR003591 -
Stsc294g00007 996 SMART LRR_typ_2 374 398 IPR003591 -
Stsc294g00007 996 Pfam Leucine Rich repeat 254 271 IPR001611 GO:0005515
Stsc294g00007 996 Pfam Protein kinase domain 671 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc294g00007 996 ProSitePatterns Protein kinases ATP-binding region signature. 673 695 IPR017441 GO:0005524
Stsc294g00007 996 Gene3D Phosphorylase Kinase; domain 1 641 742 - -
Stsc294g00007 996 SMART serkin_6 667 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc294g00007 996 Gene3D Ribonuclease Inhibitor 207 317 IPR032675 -
Stsc294g00007 996 SUPERFAMILY L domain-like 45 341 - -
Stsc294g00007 996 ProSitePatterns Serine/Threonine protein kinases active-site signature. 787 799 IPR008271 GO:0004672|GO:0006468
Stsc294g00007 996 Gene3D Ribonuclease Inhibitor 43 206 IPR032675 -
Stsc294g00007 996 Gene3D Ribonuclease Inhibitor 318 590 IPR032675 -
Stsc294g00007 996 ProSiteProfiles Protein kinase domain profile. 667 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc294g00007 996 SUPERFAMILY L domain-like 276 590 - -
Stsc294g00007 996 ProSiteProfiles Leucine-rich repeat profile. 185 207 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc294g00007 Stsc-Chr294 33974 40935 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc294g00007 113 996 Receptor kinase-like Gene Family AT5G07180 74.915 0.0 1330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Stsc294g00007 Pkinase 5.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc294g00007 K20718 - gmx:100811653 1653.26