Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2932g00002 ATGGCTCATCATCACCACCCCATTTTGGGTCTCATCCTCTTTTTTCTTTTTACCTTCTCTTCTCTTTCAACATTTTCACATGCACATTTTCCAATAGTAGAAGAAGAACAAGTCCCGTTCCCCAACCTAAGGCTTAAGAATGCATATGTTGCTCTCCAAGCTTGGAAACATTCTATCTTCTCTGATCCTTACAACACAACCGCTAACTGGATCGGCAACGACGTTTGCTCCTACAATGGCGTCTTCTGTGCTCCAGCTCTCGATGATCCCTCCATGGACGTCGTCGCCGGCATCGACCTTAATCACGCTGACATCGCCGGAAATCTTCCCAGTGAGTTAGGCCTCTTGACTGACATGGCGCTTTTCCACATCAATTCCAACAGGTTTTGTGGAATCGTACCTCCATGCTTGGAGAATTTCACTCTCATGCATGAATTTGATATCAGTAACAATCGATTCGTTGGTGGCTTCCCCAGCGTGGTTCTCCAATGGCCACACTTGAAGTACCTCGACATTAGATTCAACGATTTCGAAGGGCCTTTGCCGAAGGAGCTATTCGAGATGGATCTTGATGCAATCTTCTTGAACAATAACCGTTTCACCTCTTCTCTCCCTTCAACTCTCGGCAAATCCAAAGCTTCTGTCATTACTTTCGCTAACAATAAGTTGACAGGCTGCATTCCAAGATCGATTGGAAAGATGAAGAAGTTGAATGAGGTTATATTTATGGGTAACGATCTGGGCGGTTGTTTCCCGGAAGAGTTTGGTATGATGGAGAATTTGAATGTGTTGGATCTTAGCGATAATCATTTTGTAGGTACTCTACCTAACCTAACGGGTTTGAAGAGCGCGGAGATCATAGACATTGCTAGCAATGAGCTTAGCGGTTATGTGTCTGAGTCTATTTGCGAATTACCTTCGCTGAAGAACTTTACGTACTCTGATAATTACTTCACCGGGGAAGCTCCAACTTGTGCGGCTTCTTCTTCGAGTTCTGCTACTGGAATTATATTTAATGATTCAGGAAATTGTTTGATCGGAAAGAAGTTACAAAAGAAAACTAAATTGTGCTTGTCAATATTAGCTAGGCCTGTAGATTGTGACAAGGTTTGTGGTTGTGGAGAAGGACCCTCGTCGTCATCATTACCTTTAGAAATAAAGATAAAGACATCTCCAAAGAAAAAGCTCATTAACTCAGCTTATAGGATTGTTGAGGAGCTCGAGCTTGAGTTGGCTTTGCTCACTTCCAATTAA 1254 0.4298 MAHHHHPILGLILFFLFTFSSLSTFSHAHFPIVEEEQVPFPNLRLKNAYVALQAWKHSIFSDPYNTTANWIGNDVCSYNGVFCAPALDDPSMDVVAGIDLNHADIAGNLPSELGLLTDMALFHINSNRFCGIVPPCLENFTLMHEFDISNNRFVGGFPSVVLQWPHLKYLDIRFNDFEGPLPKELFEMDLDAIFLNNNRFTSSLPSTLGKSKASVITFANNKLTGCIPRSIGKMKKLNEVIFMGNDLGGCFPEEFGMMENLNVLDLSDNHFVGTLPNLTGLKSAEIIDIASNELSGYVSESICELPSLKNFTYSDNYFTGEAPTCAASSSSSATGIIFNDSGNCLIGKKLQKKTKLCLSILARPVDCDKVCGCGEGPSSSSLPLEIKIKTSPKKKLINSAYRIVEELELELALLTSN 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2932g00002 417 Gene3D Ribonuclease Inhibitor 47 340 IPR032675 -
Stsc2932g00002 417 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 14 379 - -
Stsc2932g00002 417 Coils Coil 397 417 - -
Stsc2932g00002 417 Pfam Leucine rich repeat N-terminal domain 49 83 IPR013210 -
Stsc2932g00002 417 FunFam Leucine-rich repeat extensin-like protein 1 49 210 - -
Stsc2932g00002 417 SUPERFAMILY L domain-like 49 326 - -
Stsc2932g00002 417 ProSiteProfiles Leucine-rich repeat profile. 260 282 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2932g00002 Stsc-Chr2932 1827 4949 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2932g00002 40 369 Trihelix Transcription Factor Family AT1G49490 61.934 3.56e-153 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2932g00002 - - aip:107621173 586.645