Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc28g00023 ATGTCTTCCCTTCTCATATATCTCTCCCTTCTGACAATAACCTTAGTTTCTTCATCCACAGAATTTGTCTACAACACCAACTTCAACTCCACCAACATAAATCTCTATGCAAACGCCACCATTCGTCATGATTCTCACTCTTCAATTCTCACCCTCACCAACCATTCCTCTTTCTCTATTGGCCGTGCTTTCTACCCTTCCAAGATCCCAACTAAATCTTCTTTTTCTTCCACCCCTTTACCATTCTCAACCTCCTTCGTCTTCTCCATTGCACCATTCAAGCACCTTCTCCCTGGCCATGAATTCAATGACATCAATGATAACCATGTGGGTTTGGATGTAAATTCTCTTACTTCTTTGGCCTCACATGATGCTGGATTTTGGGTTAGTGGGAAACATGGTGAAAAGTTTAAGGAATTGAAGCTTAACAATGGTGAGAACTATCAAGTGTGGATTGAGTATTCAGATTCTAGAGTTAATGTAACAATGGCTATTGCAGGGAAAAGAAGGCCTGATAGGCCTTTGATTAGTGAGGTTGTGAATCTTTCTGATGTTTTTTTGGATGAAATGTTTGTGGGATTTTGTGGGGCAACTGGACAACTTGTTGAGAGTCACAAGATCTTGGCATGGAGCTTTAGCAACTCGAACTTTTCGATCGGCGATGCTTTGGTAACAGCGAATTTGCCTTCATTTGTGCTTCCAACAGAACCAGTTTTGAGGTCAAGAGGATTTGTTTCAGGGATCACTGTTGGTGTTTTTATCATTGTTGTTGGTAGTGCAGCTATGGTGTTTGTGATTTTGTTCAAAAGAAAAAGGAGCAAAAGAATGGAGGAAGAGGGTGATACTGAAGACTGGGAATTAGAGTATTGGCCACACCGTTTCGGTTATGAAGACATTTATGCTGCAACTAAAGGATTTTCAGAAGAGAATGTAATTGGGTTTGGAGGGAATGGAAAAGTTTATAAAGGGCTTCTACAAGGAGTAGAAGTAGCAGTGAAAAGAATCCCTTATGACAGAGAATATGGTATGAGGGAGTTTTTATCTGAGATTTCCAGTTTAGGAAGATTGAAGCATAGGAATGTAGTTCCCTTGAGGGGTTGGTGCAAGAAAGAGAGAGGAAGCTTGATCCTAATTTATGATTACATGGAAAATGGAAGTTTGGACAAGAGAATATTTGATTCTGATGAGAACTCAATTTTCCATTGGAAAAACAGAATCAAGGTGCTGAAGGATGTTGCTATGGGGATATTGTATTTGCATGAAAGTTGGGAGGTTAAGGTGTTGCATAGAGACATAAAAGCGAGCAATGTGTTACTTGACAAGGATATGAATGCAAGATTGGGGGATTTCGGAGTTGCCCGGATGCACCATCACGAGCAAATCGCTAACACCACCTCTCGTGTGATCGGAACGGTCGGCTACATAGCACCGGAGCTGCTAAGAACCGGGAGAGCCTCGACGCAAACCGACGTGTTCAGCTTCGGCGTGTTGGTTGTAGAAGTTATGTGTGGGAGAAGGCCTATAGAAGAGAACAAACCAGCATTGGTTAGTTGGGTTTGGAGGTTAATGGAGAGAGGAGAGTTGTGTTATGCTATTGATGAAAGATTGAAAATGAGGGATGATGAAGAATGTAGCATTGATGAAGTGTTGAGAGTTCTTCATGTTGGTTTGTTGTGCACACATTATGATCCTCAAGTTAGGCCAAGTATGAGGGAAGTTGTGAAAGTTCTGGAAGGTGAGAGTTTGGATATAAGCTTGATTGATAAAATAAATTCAGCTGCTGCTGGAAATGGCGGAGTTCATCCCACCATTGAGGATGTGTCTCAATGTTCTTTCACAACTCAATATGAGGGCAGATGA 1860 0.4151 MSSLLIYLSLLTITLVSSSTEFVYNTNFNSTNINLYANATIRHDSHSSILTLTNHSSFSIGRAFYPSKIPTKSSFSSTPLPFSTSFVFSIAPFKHLLPGHEFNDINDNHVGLDVNSLTSLASHDAGFWVSGKHGEKFKELKLNNGENYQVWIEYSDSRVNVTMAIAGKRRPDRPLISEVVNLSDVFLDEMFVGFCGATGQLVESHKILAWSFSNSNFSIGDALVTANLPSFVLPTEPVLRSRGFVSGITVGVFIIVVGSAAMVFVILFKRKRSKRMEEEGDTEDWELEYWPHRFGYEDIYAATKGFSEENVIGFGGNGKVYKGLLQGVEVAVKRIPYDREYGMREFLSEISSLGRLKHRNVVPLRGWCKKERGSLILIYDYMENGSLDKRIFDSDENSIFHWKNRIKVLKDVAMGILYLHESWEVKVLHRDIKASNVLLDKDMNARLGDFGVARMHHHEQIANTTSRVIGTVGYIAPELLRTGRASTQTDVFSFGVLVVEVMCGRRPIEENKPALVSWVWRLMERGELCYAIDERLKMRDDEECSIDEVLRVLHVGLLCTHYDPQVRPSMREVVKVLEGESLDISLIDKINSAAAGNGGVHPTIEDVSQCSFTTQYEGR 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc28g00023 619 SUPERFAMILY Concanavalin A-like lectins/glucanases 5 99 IPR013320 -
Stsc28g00023 619 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 265 381 - -
Stsc28g00023 619 ProSiteProfiles Protein kinase domain profile. 306 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc28g00023 619 Gene3D Transferase(Phosphotransferase) domain 1 382 590 - -
Stsc28g00023 619 PANTHER - 39 581 - -
Stsc28g00023 619 Pfam Legume lectin domain 101 216 IPR001220 GO:0030246
Stsc28g00023 619 Pfam Legume lectin domain 20 91 IPR001220 GO:0030246
Stsc28g00023 619 FunFam L-type lectin-domain containing receptor kinase S.4 382 588 - -
Stsc28g00023 619 Gene3D - 101 232 - -
Stsc28g00023 619 Pfam Protein kinase domain 307 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc28g00023 619 Gene3D - 18 100 - -
Stsc28g00023 619 SMART serkin_6 306 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc28g00023 619 SUPERFAMILY Concanavalin A-like lectins/glucanases 99 326 IPR013320 -
Stsc28g00023 619 SUPERFAMILY Protein kinase-like (PK-like) 285 578 IPR011009 -
Stsc28g00023 619 Gene3D Phosphorylase Kinase; domain 1 267 381 - -
Stsc28g00023 619 ProSitePatterns Protein kinases ATP-binding region signature. 312 333 IPR017441 GO:0005524
Stsc28g00023 619 CDD STKc_IRAK 312 579 - -
Stsc28g00023 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672|GO:0006468
Stsc28g00023 619 CDD lectin_legume_LecRK_Arcelin_ConA 20 215 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc28g00023 Stsc-Chr28 182622 184812 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc28g00023 18 529 Receptor kinase-like Gene Family AT4G04960 55.575 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Stsc28g00023 Pkinase 3.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc28g00023 - - adu:107478122 927.932