Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc28g00020 ATGGGTTGCACATGTTCAAAGAGTTCGGCTGTCGAAGATAGCAGGGAAGGGATCACAAACAAATTCTCGTCATCAAGCACCAGGGCGTCGGAACTGAACATTTCGCGGTTGAATTCCTCGAAAAGGGTTGAGGGGATTCGGGTTAAAGATAAGTCACTAGATGGTAATGATGTGAAAGTTTCATTAATTGATAAGAATGCCAATAGTTCGGTTCAGTCATACGATGATCAAACTGGGAAGAAGAAGATAGAGAAACCTGAATTGATTGTTATTGATCATCCTGCTATTGAAAGGATTCCGAAGGCTACAGAGGCAGAGCAAGTTTCAGCAGGATGGCCGGCATGGCTTTCTTCAGTTGCTGGTGAAGCTATCAAGGGATGGATACCACGAAGCGCAAATACTTTCGAAAGGTTAAACAAAATTGGGCAAGGAACTTACAGTACTGTTTATAAGGCACGTGATGTGACTAATCAAAAGATTGTTGCCCTGAAGAGGGTACGTTTCGACAATCTTGACCCTGAGAGTGTCAAGTTTATGGCAAGGGAAATCCTTGTTCTGCGTAGGCTCAACCATCCAAACATAATAAAGTTGGACAGCTTGATAACATCACCGACGTCCCGCAGCTTATACCTTGTTTTTGAGTATATGGAACATGATCTTACAGGACTTGCATCAAATCCGGCCATTAAATTCTCTGAACCACAGCTGAAATGCTACATGCAGCAACTTCTTAGTGGATTGGATCATTGTCATAGTCATGGTGTTCTCCATCGTGATATAAAGGGATCAAATCTTCTCATCGACAACAATGGCATCTTAAAGATTGCAGATTTTGGTTTGGCGAGCTTTTTTGACCCCCATCATAGTGTTCCATTGACAAGCCGTGTTGTAACTCTTTGGTATAGACCACCGGAACTTTTACTTGGAGCAAACCACTATGGGGTTGCCGTGGATTTGTGGAGCACTGGTTGCATACTGGGAGAACTATATACTGGCAGACCTATATTGCCAGGAAAAACAGAGGTTGAGCAGATACATCGGATTTTTAAACTTTGTGGTTCACCGTCTGAGGACTATTGGCTTAAATTGCGGTTGCCGCATTCAACTGTATTCAAGCCTCCACACCATTATAGGAGATGTGTTGCAGACACATTTAAGGATTATCCACATTCTGCTGTGAAGCTCATAGAGACCCTATTATCTGTGGATCCAGCACATCGAGGGACGGCTGCTGCTGCTCTCAAAAGTGAGTTCTTTACATCAGAACCTCTGGCTTGTGATCCATCAATCTTACCAAAATATCCTCCCAGCAAAGAAATCGATGCTAAATTGCGGGATGAAGCAAACAGAAGGCAAGGTGCTGTTGGAGGTAGGGAGCAACGAGTTGGCTCAGGACTTAGACAAGAAAAAGTATCAAGGGCACAGGTCACAGCAAAAGACAACACTGATTCAGGAATATCAATGCAGCAAGTGCAACGATATTCCTTTACAAAGAACCGAACCGAAGTTTCCAACCCTCAGAGAGAATATGTGTCCGGACAACTGGTTTACCCACCCAAACAGTCAGAAAATGCTAAAGAAACAGGAAATAATCTCTCTGGGCATATCTATAGGAGGCCTTCACATTCAGGTCCATTGGTTCCTGGTTCAAGCTGGGGAAGGGGCGGAAAGGAAGTTGATGATGGGCCTCCTGTTTCGAACAGAGTGAACCTTTCGAAATTATCTGGGCTAATGGCATCTAGGACTCAGGTCTCTGAAGATCAGGAAGGAAAACCAGTTCACTTGCAATACAGAAAACCAGTTGAAATAAGAAAATCCATGGAGTTAACTAGTGGATCAGAGTTGAGAAGAAGACAAGATCAAAAACGTATTGCAGATCTTAGTCAGATTGAGAATAGAAGGGACCCCGCTGAAAAGTCAACTCCGGATGCACGTGGATCCAGGGGAAACAAGATATATCTATCGGGTCCGTTAATGCCTTCAAGCAACATGGATCAGATGCTCAAAGAGCACGAGCGAAAGATCCAGGAACTTTCAAGACGTGCAAGAACCGGCAAGTCACGAGCAAGAGACTTGACTGTGGGACAGGATAAGAACCACTTAAAGATGTGGTATCCACTTTGCACTGCAGAATTTATGGTAACTTCCATGGGGTGA 2157 0.439 MGCTCSKSSAVEDSREGITNKFSSSSTRASELNISRLNSSKRVEGIRVKDKSLDGNDVKVSLIDKNANSSVQSYDDQTGKKKIEKPELIVIDHPAIERIPKATEAEQVSAGWPAWLSSVAGEAIKGWIPRSANTFERLNKIGQGTYSTVYKARDVTNQKIVALKRVRFDNLDPESVKFMAREILVLRRLNHPNIIKLDSLITSPTSRSLYLVFEYMEHDLTGLASNPAIKFSEPQLKCYMQQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGILKIADFGLASFFDPHHSVPLTSRVVTLWYRPPELLLGANHYGVAVDLWSTGCILGELYTGRPILPGKTEVEQIHRIFKLCGSPSEDYWLKLRLPHSTVFKPPHHYRRCVADTFKDYPHSAVKLIETLLSVDPAHRGTAAAALKSEFFTSEPLACDPSILPKYPPSKEIDAKLRDEANRRQGAVGGREQRVGSGLRQEKVSRAQVTAKDNTDSGISMQQVQRYSFTKNRTEVSNPQREYVSGQLVYPPKQSENAKETGNNLSGHIYRRPSHSGPLVPGSSWGRGGKEVDDGPPVSNRVNLSKLSGLMASRTQVSEDQEGKPVHLQYRKPVEIRKSMELTSGSELRRRQDQKRIADLSQIENRRDPAEKSTPDARGSRGNKIYLSGPLMPSSNMDQMLKEHERKIQELSRRARTGKSRARDLTVGQDKNHLKMWYPLCTAEFMVTSMG 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc28g00020 718 SMART serkin_6 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc28g00020 718 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Stsc28g00020 718 Coils Coil 661 688 - -
Stsc28g00020 718 SUPERFAMILY Protein kinase-like (PK-like) 128 425 IPR011009 -
Stsc28g00020 718 MobiDBLite consensus disorder prediction 519 537 - -
Stsc28g00020 718 CDD STKc_CDK9_like 135 419 - -
Stsc28g00020 718 Gene3D Transferase(Phosphotransferase) domain 1 218 456 - -
Stsc28g00020 718 FunFam probable serine/threonine-protein kinase At1g54610 218 459 - -
Stsc28g00020 718 MobiDBLite consensus disorder prediction 587 645 - -
Stsc28g00020 718 MobiDBLite consensus disorder prediction 1 27 - -
Stsc28g00020 718 MobiDBLite consensus disorder prediction 450 488 - -
Stsc28g00020 718 MobiDBLite consensus disorder prediction 519 661 - -
Stsc28g00020 718 Pfam Protein kinase domain 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc28g00020 718 PANTHER CELL DIVISION PROTEIN KINASE 133 424 - -
Stsc28g00020 718 ProSitePatterns Protein kinases ATP-binding region signature. 141 164 IPR017441 GO:0005524
Stsc28g00020 718 FunFam probable serine/threonine-protein kinase At1g54610 122 217 - -
Stsc28g00020 718 ProSiteProfiles Protein kinase domain profile. 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc28g00020 718 Gene3D Phosphorylase Kinase; domain 1 122 217 - -
Stsc28g00020 718 MobiDBLite consensus disorder prediction 568 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc28g00020 Stsc-Chr28 174455 182060 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc28g00020 127 460 Core Cell Cycle Gene Families AT5G10270 48.000 1.01e-110 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Stsc28g00020 Pkinase 5.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc28g00020 - - gmx:100807590 1076.23