Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc289346g00001 | ATGGCTGGGATGGATGTCCTCTGCAGTGACAAAACCGGGACCTTGACGTTGAATAAGCTCAGTGTTGATAGAAACTTGATTGAGGTGTTTGCTAAGGGTGTTGAGAAGGAGTATGTTATCCTTCTTGCTGCAAGGGCCTCTAGGACCGAAAATCAGGATGCTATAGATGCTGCAATTGTTGGGATGCTTGCTGATCCAAAAGAG | 204 | 0.4608 | MAGMDVLCSDKTGTLTLNKLSVDRNLIEVFAKGVEKEYVILLAARASRTENQDAIDAAIVGMLADPKE | 68 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc289346g00001 | 68 | Gene3D | - | 5 | 19 | IPR023214 | - | |
| Stsc289346g00001 | 68 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 1 | 68 | - | - | |
| Stsc289346g00001 | 68 | SUPERFAMILY | HAD-like | 1 | 45 | IPR036412 | - | |
| Stsc289346g00001 | 68 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 10 | 16 | IPR018303 | - | |
| Stsc289346g00001 | 68 | Gene3D | - | 20 | 68 | IPR023299 | GO:0000166 | |
| Stsc289346g00001 | 68 | FunFam | Phospholipid-transporting ATPase IC | 5 | 17 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc289346g00001 | Stsc-Chr289346 | 8 | 222 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc289346g00001 | 1 | 68 | Primary Pumps ATPases | AT2G24520 | 88.235 | 2.91e-35 | 123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc289346g00001 | K01535 | - | gmx:100794372 | 132.494 |