Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc288g00010 ATGGCTTCATCGGAAAATCCCAACTGGGTTTTCGACTACGCTTATCTCGACGACATTCACTCTCTTTCCGACCCTTCCAACTTCTCTTGGCCCCCTCCTCCTCCTCCAACCACTCTAAGTGTGGAACTTCATGATTCGCTTCCAAATTCTCATGAACCCGATCAATCTGCCTCAAGAAAACGCTTGAGGTCAGGATCCTGCAACCCTTCTGGTTCCAAAGCATGTAGAGAGAAAATGCGACGGGATCGATTGAATGACAGATTTTTGGAACTTGGTTCAATTTTGGACCCTGGAAGGCCTCCCAAAATGGATAAGGCTGCTATACTGAGTGACGCGGCTCAACTGGTTTCGCAGTTGCGCTGCGAGGCTCAGAAGCTTAAAGAATCAACTGAGAATCTGCAGGACAAAATCAATGAATTGAAGGCTGAGAAGAATGAGCTCCGTGACGAGAAGCAGCGGCTTAAAGCAGAGAAAGATAGCCTTGAGAAGCAGCTGAAAGCCTTGAATACACAACCTGGTTTTCTGCATCACCCTCCAACACTTCCAGCTGTTTTTCCTCATCCACCAGGGCAAGTTCTTGGAAGCAAGCTGGTGCCTTTCATGGGCTACCCAGGAGTTTCCATGTGGCAGTTTTTACCACCTGCTGCTGTCGACACATCACAGGATCATGTACTCCGGCCACCGGTTGCATAA 693 0.4863 MASSENPNWVFDYAYLDDIHSLSDPSNFSWPPPPPPTTLSVELHDSLPNSHEPDQSASRKRLRSGSCNPSGSKACREKMRRDRLNDRFLELGSILDPGRPPKMDKAAILSDAAQLVSQLRCEAQKLKESTENLQDKINELKAEKNELRDEKQRLKAEKDSLEKQLKALNTQPGFLHHPPTLPAVFPHPPGQVLGSKLVPFMGYPGVSMWQFLPPAAVDTSQDHVLRPPVA 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc288g00010 230 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 68 119 IPR011598 GO:0046983
Stsc288g00010 230 SMART finulus 74 125 IPR011598 GO:0046983
Stsc288g00010 230 MobiDBLite consensus disorder prediction 24 79 - -
Stsc288g00010 230 Pfam Helix-loop-helix DNA-binding domain 72 119 IPR011598 GO:0046983
Stsc288g00010 230 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 143 IPR036638 GO:0046983
Stsc288g00010 230 CDD bHLH_AtILR3_like 73 148 - -
Stsc288g00010 230 Coils Coil 109 171 - -
Stsc288g00010 230 PANTHER BHLH TRANSCRIPTION FACTOR 4 230 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Stsc288g00010 230 CDD bZIP 134 166 - -
Stsc288g00010 230 Gene3D - 71 148 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc288g00010 Stsc-Chr288 33732 35398 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc288g00010 1 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 57.265 3.06e-88 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc288g00010 HLH 2.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc288g00010 - - mnt:21402686 309.686