Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc287g00004 ATGGCCACAGACGCAACCGCCAACTTTAAAAAGAACCCCGATTTCCGGCCAGACTTCCACCCGCCTGAGAATCTCCCCGCCGCCGTAACCGCCGCCGCAGCACACGACGGCCTCCACTTCTGGCAGTTCATGGTCGCCGGCTCCATCGCCGGCTGCGTGGAGCACATGGCAATGTTCCCCGTTGACACCGTCAAGACCCACATGCAAGCCCTCGGCTCCTGCCCTATCAAGTCCGTCAGCGTCCGTCAGGCCCTCCGTTCAATAATCCAGTCCGAGGGTCCCTCCGCTCTCTACCGCGGCATCGCCGCCATGGGCCTTGGCGCCGGACCAGCTCACGCCGTCTATTTCTCCGTTTATGAGACCTGCAAGAAACGGTTTTCTGGTGGAAACCCTAATAACCCCATGGCTCACGCTGCTTCTGGTGTTGTTGCCACGGTGGCAAGCGACGCCGTTTTTACCCCTATGGATATGGTGAAGCAGAGGCTCCAATTGAGTAATAGTGGTTACAAGGGTGTTTGGGATTGTGTTAAGAGGGTGATGAGTGAGGAAGGGTTTGGGGCGTTTTATGCTTCATATAGGACCACAGTTTTGATGAATGCACCGTACACGGCGGTGCATTTTGCGACATATGAGGCTGCGAAGCGAGGTTTGATGGAGGTGTCCCCGGAGAGCATAGATGATGAGAGGTTGGTGGTTCATGCCACGGCTGGGGCTGCCGCTGGTGCTTTGGCTGCTGCAGTCACAACGCCGCTTGATGTTGTTAAAACTCAATTGCAGTGTCAGGGTGTTTGCGGATGCGATAGATTCAAGAGCAGTTCGATTCAAGATGTAATTAAAACTATAGTGAAAAAGGATGGATATAGGGGGCTGATGCGAGGATGGATTCCAAGGATGCTGTTTCATGCTCCTGCAGCTGCTATATGCTGGTCTACATATGAAGCAGGAAAGTCATTTTTCCAAGATTTCAATCAGCCAAAGGACGTTGGTACTGTCACCTAA 999 0.5355 MATDATANFKKNPDFRPDFHPPENLPAAVTAAAAHDGLHFWQFMVAGSIAGCVEHMAMFPVDTVKTHMQALGSCPIKSVSVRQALRSIIQSEGPSALYRGIAAMGLGAGPAHAVYFSVYETCKKRFSGGNPNNPMAHAASGVVATVASDAVFTPMDMVKQRLQLSNSGYKGVWDCVKRVMSEEGFGAFYASYRTTVLMNAPYTAVHFATYEAAKRGLMEVSPESIDDERLVVHATAGAAAGALAAAVTTPLDVVKTQLQCQGVCGCDRFKSSSIQDVIKTIVKKDGYRGLMRGWIPRMLFHAPAAAICWSTYEAGKSFFQDFNQPKDVGTVT 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc287g00004 332 FunFam Mitochondrial carrier protein, expressed 133 327 - -
Stsc287g00004 332 Pfam Mitochondrial carrier protein 133 219 IPR018108 -
Stsc287g00004 332 Pfam Mitochondrial carrier protein 229 321 IPR018108 -
Stsc287g00004 332 Pfam Mitochondrial carrier protein 38 127 IPR018108 -
Stsc287g00004 332 ProSiteProfiles Solute carrier (Solcar) repeat profile. 228 318 IPR018108 -
Stsc287g00004 332 PANTHER MITOFERRIN-1-RELATED 30 321 - -
Stsc287g00004 332 ProSiteProfiles Solute carrier (Solcar) repeat profile. 38 125 IPR018108 -
Stsc287g00004 332 ProSiteProfiles Solute carrier (Solcar) repeat profile. 132 216 IPR018108 -
Stsc287g00004 332 SUPERFAMILY Mitochondrial carrier 36 313 IPR023395 -
Stsc287g00004 332 Gene3D Mitochondrial carrier domain 133 332 IPR023395 -
Stsc287g00004 332 PRINTS Mitochondrial carrier protein signature 56 70 IPR002067 GO:0055085
Stsc287g00004 332 PRINTS Mitochondrial carrier protein signature 147 165 IPR002067 GO:0055085
Stsc287g00004 332 PRINTS Mitochondrial carrier protein signature 237 259 IPR002067 GO:0055085
Stsc287g00004 332 PRINTS Mitochondrial carrier protein signature 189 207 IPR002067 GO:0055085
Stsc287g00004 332 PRINTS Mitochondrial carrier protein signature 43 56 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc287g00004 Stsc-Chr287 22595 25792 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc287g00004 236 328 Chloroplast and Mitochondria Gene Families AT1G07030 30.108 8.24e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc287g00004 K15113 - gmx:100802640 576.244