Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc286g00004 ATGCTTTCTAAGCAGATTGATTTCTTTGTTGACGATAAAAATGTTCATCCTGGGAATAAGATTTCACCCATACTTCTTAAAGCAATAGAGGAATCCTTTATTTCATTGGTTATCTTCTCGGAACAGTATGCTTATTCGAAATGGTGTATGGAGGAGCTTGTGAAGATAACTGAAAGCATGAAGCAATATAAAAGGATTGTGATGCCTGTTTTTTACCATGTTGAGCCTTATCAGGTAAGGCACCAGAAAGGAACTTTTGCAGACGCTTTTGATGACCACAAAAACAAGTATAAAGTAAAGAAAGCAGAGTTGCAGAAATGGAGATCCGTCTTAAAGGAGATTGCTAATATATCTGGAAATCATTATCCTTCTCCAAAATATGAACATGAATCTGAACTCATCGAAGAAATTGTCAAGGAAATTTCGGAGAAATTACCGGATACTTTTTCGAATGCATCCCAAGGGCTTATAGGAATTGATGAAAATTTTAAATTTCTTCGACCTTTAATGGCAATTGAGTCTGATGAGGAAGTTCGAATTGTGGGAATTTGGGGAATGGGAGGCATAGGAAAATCAACAATTGCAAAAGCATTATTTGACAAATATGCCTCTCGATACGAAGGTTCTTCCATTCTATGTGTAAAAGAAGAATTGGAGAATTGTAGTCGACATAGCTTATATGAGAAACTTTTTTCTCAACTACTTGGTGGAGAATATCACCTTGTGAATGGACCCCAAGCAAGATTGGAGTATGTCAGGAGAAGGTTGAATCGGAAAAAGGTTCTCATAGTGCTTGATGGTGTTGATACATTAGACATGTTAGAATATCTAACCAGAGAACAAATCTTCTTGGCACCTGGTAGTAGGGTCATCGTAACAACTAGAGACAAACACCTTCTAGTTGCTGCAAGAGTGCATGAAATACACAAGGTCCAGGGATTGAGCTTTAAGAGTTCGCTTGAGCTCTTTTGCATAAAAGCGTTTAACAAAAGCTATCCTGAAAATGGATATGAAGAGCTTTCAGAAATGGCAGTTGAATATGCAGATGGCATTCCATTAGCCTTGGAAGTATTGGGTTCCTGTTTATGCTCCTCAAGAAATGCAGAAGTTTGGAAAAGTGCTCTAACAAAACTCAAGGCTCATCCGGATCGAAAAATTTTCCAAGTGTTAAAAATGAGTTACGATGGATTAGATGAGTTTGAGAGGAATATATTCCTAGACATTGCTTTCTTTTTCAAAGGAGAATGCATATATGATGTCATCAGGTTTCTAGATTCTTGTGGTTTCTATCCAGAGATTGAAATAAGCAATCTTGAACGTAAAGCACTTATTATCATTTCCCTTGATAATAGACTCAAAATGCATGATTTGATACAACAAATGGGCTGGGAAGTAGTTCGCCAAGAATCAAACAATGATGCTTCAAAGCTTACTCGAATAAATAGACCTGAAGATTTCGACAATTTATTGGAAAATAGCGAAGTAAAAAATTTGGTTGAAGGTATTATGATTGACTTGTCTCAAATCAAAAAAGTAAGCTTCAATGACAAAGCCTTCAAAAATATGCCTCGTCTAAGATTTCTTAAACTTTATAACTCTTCGGGTGAAAGACTATCACATGTGATTGTTCCTACAACTCTTGAGACTTTTTCTAAGAAACTAAGATATTTGGAATGGCATGAATATCCTTTGAGTTCTATGCCATCAGCATTTTGTGCTGATAAGCTTATTGAGCTTCGCATGCCAGGCAGTAAGATTACTAAGCTCTGGGATGGAGTGCAGGATCTTGTGAATTTAAAGATAATTGACCTTTCAGAATGCCAACAGTTGGTGGAGCTTCCAGATCTTAGCACGGCAACAAATTTAGAGGGGATAGACATCTCAGATTGTAAAGTTTTGTGTCAACTTCATCCATATATTATATCCTTCCCCACACTTAAATATTTGAGATTTCATGGCTGCAAAAAACTGAAGAGTTTTAAAGGGGAGATTCGTTCCAAGTCTCTTAGAGAACTTGATTTTAAAGGTTGCTCAAGCCTAGAGGAATTTTCGTTGTCATCACCAGGGCAACTGAATACTTTGATTTTCGGATCCTCAGGTATTTGGGGTTTTGAAAATGATCGATGCTGCCTTAAATCTCTGGAAAAACTTGATTTTAGTGATTGCAGAGGGATGATGGAACTCCCTCATAATGGGATAGCTTTATCAAGATTGCAGGCATTGATCCTAAAAGGTTGCAGGAGTCTTGCATCTATACCAGAACTTCCATTATCTATATCTATATCTATAGGAAGACATGCTGATACATCAAAGGAAGCAATATTATTCAATTTAAAGGCAATATCCACAATTAAATGGAGCAACTTGATGAATCGCAGGAGGAGATCGGGTGTAGGGCCATGGAATACTATCGAGAAAGATGCTGGTCTCACAATATTAAAAAAGATATTGTTGATGTCAGCAAGAAATGGTATTTTGTGGGGTTCTAATAAAATTGATAAGTGGTTCAGTTGTCATGTTTGTTATCCAGGGAGCGAGGTGGCAAAGTGGTTCAGATGTCAAACAGCAGAAGGAGCTTCCATAACAGTTGAAATAGATCAACCTTACAATCAGTTGTTGGGTTTCTTTGTCTCATGTGTTGTTTCTCAAGAGTTCTCTCCTTATTACCAAGTCTGTTGTGAATACGACTTGGGAGAGGGTGAAAAGTACCCACTTGGAAGTTATGAGCTACGCGATCTACGTGAAAGATGGAGCACTGATCACGTTTGTCTATGGTTTCATTCATTTTATAATAGCCGAATAATGAGGGCCATTGAAAGGTGCGTAGGCAGTTATGATCATGGCACCACTTGGAACAAAACCATTTTATTCACATTCACCGCTGAAGGACTTGCATCTGCAGTGAGTGATATGTTTATAAAAGGGTGTGGGGTTTTACCAATATATGCCTCAGATGTCCTCCAACTCATTCCGAAACTGGAATTGGAGTGGAAGGGTCTTCATCAAGAAGAAGAAGAAGAAGAAGAAAGAAGAAGAAGAAGAAGAATCATCCTTCAATCCAATAGTAGCAGTGATGAAGAAGAAGAAGAAAGAAGAAGAAGAAAGAAGAAGACAAAGAAGAAGATTAAGAAGAATCATCTTCAATCCAATAGTAGCAGTGATGAAGAAGAAGAAGAAAGAAGAAGAAGAAAGAAGAAGACAAAGAAGAAGATTAAGAAGAATCATCCTTCAATCCAATAG 3240 0.3738 MLSKQIDFFVDDKNVHPGNKISPILLKAIEESFISLVIFSEQYAYSKWCMEELVKITESMKQYKRIVMPVFYHVEPYQVRHQKGTFADAFDDHKNKYKVKKAELQKWRSVLKEIANISGNHYPSPKYEHESELIEEIVKEISEKLPDTFSNASQGLIGIDENFKFLRPLMAIESDEEVRIVGIWGMGGIGKSTIAKALFDKYASRYEGSSILCVKEELENCSRHSLYEKLFSQLLGGEYHLVNGPQARLEYVRRRLNRKKVLIVLDGVDTLDMLEYLTREQIFLAPGSRVIVTTRDKHLLVAARVHEIHKVQGLSFKSSLELFCIKAFNKSYPENGYEELSEMAVEYADGIPLALEVLGSCLCSSRNAEVWKSALTKLKAHPDRKIFQVLKMSYDGLDEFERNIFLDIAFFFKGECIYDVIRFLDSCGFYPEIEISNLERKALIIISLDNRLKMHDLIQQMGWEVVRQESNNDASKLTRINRPEDFDNLLENSEVKNLVEGIMIDLSQIKKVSFNDKAFKNMPRLRFLKLYNSSGERLSHVIVPTTLETFSKKLRYLEWHEYPLSSMPSAFCADKLIELRMPGSKITKLWDGVQDLVNLKIIDLSECQQLVELPDLSTATNLEGIDISDCKVLCQLHPYIISFPTLKYLRFHGCKKLKSFKGEIRSKSLRELDFKGCSSLEEFSLSSPGQLNTLIFGSSGIWGFENDRCCLKSLEKLDFSDCRGMMELPHNGIALSRLQALILKGCRSLASIPELPLSISISIGRHADTSKEAILFNLKAISTIKWSNLMNRRRRSGVGPWNTIEKDAGLTILKKILLMSARNGILWGSNKIDKWFSCHVCYPGSEVAKWFRCQTAEGASITVEIDQPYNQLLGFFVSCVVSQEFSPYYQVCCEYDLGEGEKYPLGSYELRDLRERWSTDHVCLWFHSFYNSRIMRAIERCVGSYDHGTTWNKTILFTFTAEGLASAVSDMFIKGCGVLPIYASDVLQLIPKLELEWKGLHQEEEEEEERRRRRRIILQSNSSSDEEEEERRRRKKKTKKKIKKNHLQSNSSSDEEEEERRRRKKKTKKKIKKNHPSIQ 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc286g00004 1079 Pfam TIR domain 4 153 IPR000157 GO:0007165
Stsc286g00004 1079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 408 IPR027417 -
Stsc286g00004 1079 Gene3D - 146 309 IPR027417 -
Stsc286g00004 1079 MobiDBLite consensus disorder prediction 1008 1033 - -
Stsc286g00004 1079 MobiDBLite consensus disorder prediction 1063 1079 - -
Stsc286g00004 1079 Pfam NB-ARC domain 174 384 IPR002182 GO:0043531
Stsc286g00004 1079 Pfam Leucine Rich Repeat 575 594 IPR011713 -
Stsc286g00004 1079 PRINTS Disease resistance protein signature 594 610 - -
Stsc286g00004 1079 PRINTS Disease resistance protein signature 255 269 - -
Stsc286g00004 1079 PRINTS Disease resistance protein signature 180 195 - -
Stsc286g00004 1079 PRINTS Disease resistance protein signature 348 362 - -
Stsc286g00004 1079 SMART till_3 3 117 IPR000157 GO:0007165
Stsc286g00004 1079 SUPERFAMILY "Winged helix" DNA-binding domain 385 470 IPR036390 -
Stsc286g00004 1079 Gene3D - 314 398 IPR042197 -
Stsc286g00004 1079 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 684 IPR044974 GO:0006952
Stsc286g00004 1079 ProSiteProfiles TIR domain profile. 1 145 IPR000157 GO:0007165
Stsc286g00004 1079 MobiDBLite consensus disorder prediction 1047 1062 - -
Stsc286g00004 1079 SUPERFAMILY L domain-like 496 785 - -
Stsc286g00004 1079 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 119 IPR035897 -
Stsc286g00004 1079 Gene3D - 1 145 IPR035897 -
Stsc286g00004 1079 MobiDBLite consensus disorder prediction 1008 1079 - -
Stsc286g00004 1079 Gene3D Ribonuclease Inhibitor 667 769 IPR032675 -
Stsc286g00004 1079 Gene3D Ribonuclease Inhibitor 467 666 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc286g00004 Stsc-Chr286 19114 26176 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc286g00004 26 754 WRKY Transcription Factor Family AT4G12020 32.341 2.83e-91 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc286g00004 - - ahf:112728390 1153.66