Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc285g00007 ATGGCCAAGTCTTGTTCTACTAGTGAAAAGAACAATAATAATGGATTGAAGAAAGGTCCATGGACTCCGGAGGAAGATCAAAAACTCATTGATTACATTCAGAAACATGGACATGGCAAGTGGCGAACCCTTCCTAAGAATGCAGGACTTAAGAGGTGTGGAAAGAGTTGCCGGCTTCGTTGGGCTAATTACTTGAGGCCTGATATAAAGAGAGGAAGATTCTCATTTGAAGAAGAAGAAATGATCATCCAGTTACACAGTGTTTTGGGAAACAAGTGGTCTACAATTGCTGCTAATTTGCCAGGAAGAACAGATAATGAGATAAAGAATTATTGGAACACTCACATCAAGAAAAGGTTGCTCAAAATGGGGATTGATCCAGTTACTCATACACCACGCCTTGATGTTCTTCAACTCTCTTCAATTCTAAGCTCAACCTTATACAATAACAATAATAATAATAATAATAATAATTACCCTACTAGCCTCTTTGGGATTGGATCATCATCAAGTGTTGCAAATAATCCTAGTCATGTCCTAAGTTTGCTCACATCTCTTCTATCGTATCAAAGCAGAAACAATTACGGTGGTTTTAGTCAAAACCAAATTGGTAGCATTAGCCCTCAATTATTGCAAAATCAAATGCAACTTAACCCTAGCCAAGCCTTCCAACCAAACCAACCTTGTGCTAATAATTTGCATGTGGAGTCCCAAAACATGAAATCAAAGTTAGAGCCTCAAATCCCTTCAATTTCTTACCCTTTTAGCCACCAAAATACGTTACCAAATTTGTGGCACTATAATGGTGGTGGTAACAACATGGCTAATAATCAACAAGGATATCCTTCGTTGGTGGAAAATAATAATCAGATTTTGTGTAATAATAGTGAAGGGATTATGGCTAATTTCAATTTGATGAACTCAATGTTATCATCTTCTACAGCTTCATCTTCTAGCCCGAGTAATTTGAATTCATCATCTTCAACGACGTTTGTGAATGGGACAACCACCGAAGATGAAAGGGACAGTTATGGAAGCAACATGTTGATGTATAATATATCAAATGGATTGAATAACTCTGCATTTTTGTGA 1092 0.3709 MAKSCSTSEKNNNNGLKKGPWTPEEDQKLIDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANYLRPDIKRGRFSFEEEEMIIQLHSVLGNKWSTIAANLPGRTDNEIKNYWNTHIKKRLLKMGIDPVTHTPRLDVLQLSSILSSTLYNNNNNNNNNNYPTSLFGIGSSSSVANNPSHVLSLLTSLLSYQSRNNYGGFSQNQIGSISPQLLQNQMQLNPSQAFQPNQPCANNLHVESQNMKSKLEPQIPSISYPFSHQNTLPNLWHYNGGGNNMANNQQGYPSLVENNNQILCNNSEGIMANFNLMNSMLSSSTASSSSPSNLNSSSSTTFVNGTTTEDERDSYGSNMLMYNISNGLNNSAFL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc285g00007 363 CDD SANT 73 116 IPR001005 -
Stsc285g00007 363 CDD SANT 20 65 IPR001005 -
Stsc285g00007 363 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Stsc285g00007 363 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Stsc285g00007 363 FunFam Transcription factor MYB39 73 134 - -
Stsc285g00007 363 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 11 296 - -
Stsc285g00007 363 FunFam MYB-related transcription factor 17 70 - -
Stsc285g00007 363 Gene3D - 17 70 - -
Stsc285g00007 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 120 IPR017930 -
Stsc285g00007 363 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
Stsc285g00007 363 Pfam Myb-like DNA-binding domain 71 115 IPR001005 -
Stsc285g00007 363 Gene3D - 73 120 - -
Stsc285g00007 363 MobiDBLite consensus disorder prediction 314 343 - -
Stsc285g00007 363 SUPERFAMILY Homeodomain-like 15 112 IPR009057 -
Stsc285g00007 363 MobiDBLite consensus disorder prediction 1 18 - -
Stsc285g00007 363 MobiDBLite consensus disorder prediction 1 23 - -
Stsc285g00007 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 69 IPR017930 -
Stsc285g00007 363 SMART sant 17 67 IPR001005 -
Stsc285g00007 363 SMART sant 70 118 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc285g00007 Stsc-Chr285 40479 42452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc285g00007 14 363 MYB Transcription Factor Family AT4G21440 46.944 1.37e-90 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc285g00007 Myb_DNA-binding 2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc285g00007 K09422 - gmx:100820398 431.409