Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc283g00008 ATGAAGGAATTCAATGACACCCTCAAATATATTGCAAGCATACGCTCTAGGGCAGAGCCTTACGGAATTTGTCGTATTGTACCTCCTACTTCCTGGAAACCACCATGTTCTCTTGAAGAAAAGAATGTATGGGAAGGCACTGAATTTGTTGCTCAGATTCAACGAATAGATGGAATCCAAGTTCAGCATGCGGAAGAAAATGTGGCTAGTTGTGAAGATACGAGGGCTAAGAGAAGAAGGGTGTCACAAGTAGATTTGGACTCTCAGGTTGCCAATGCAAGCACTTGCACTGCAAATAGTCAGGATGTTGAAGATTGTGTCTCTGAACCTTGTCCTAAATTCAGTCTCAAGACGTTTAAGAACTTTGCTGATGAATTCAAAATCCAGTACTTTGATCACAAGGGCAAGAATAAGGTTGTGGATTCTGATTTAAATTTAGCTACAAATCAACATAAGTGGGAGCCTTCTGTGGATAACATTGAGGGTGAATATAGAAGGATTGTTCAAAATCCAACTGAAGAAATTGAGGTGCTTCACGGTAACATTTTGGAGGCTGGAGGGTCTAGCAGTGGATTTCCTACAGTTGTTGATTCTGTGGAGGAACACACTTCCGCTGAATATTCAAAATCTGGATGGAACTTAAATAACATAAATTCATTGCCTGGTTCTCTTCTTTCTTTTGAAAGCTCTGGTGCTTCACTTAATTTTGGCCCTCGAATTCATGTAGGAATGTGCTTCACTCAGCTCAACTGGAAAGTTGAAGAGCACCACTTATACTTATTATCATACCTGCATTTGGGTGAGCCTAAAGTGTGGTATAGTATCCCTCAAAGATATGCTGTCAACTACGAAACAATTAGGAAGAAGTATTTATCAGCTCTGTATGCAAAACAGCCTGATATTGATGAAAATCTGATGATGCAGTTATCCTGCTCCATATTGAAGGCAGAGGGCATACCTGTATATCGCTGTGTCCAATATCCTCGTGAGTTTGTTCTTGTCTTCCCAGGAGCATATCATTCTGGATTTGATTGTGGTTTCAATTGTTCTCAATCGGTAAACTTTGCTCCCCTCGAGTGGCTGCTTCATGGACTGAATGTGGTAGAGCTATATTGTGAGAAGAGGAAAAAGACATTAATTTCATATGATAAACTCTTGCTGGAAGCAGCAAAGGAAGCTGTAAGGCTACACTGGGAAATCGACCTGTGTATGAAGGACACACCAGACAAATTAACAAGTAAAGATGTTTATCAAAGAAATGGAATTTTAGCAAAAGTTCTGGGTTCTCGTGTGAAGAGCGAAAGTATCAAGAGGCAATACCTATGCGGTTCTTTGAAGTCACAAAGAATAGATGAAAGTTTTGACGCTGGTGGCAAAAGGGAATGTGGGATATGTCTGCGTGATTTGTACTTGTCTGCTGTACGTTGTTTGTGTTCAGAAGACAAGTTTGCATGTCTGGATCATGCGAAACTGCTTTGTCCATGCTGTTGGAGCGACAAAATCCTCCTATATCGTTATGAAATCAGCGAGTTGAATGTTCTTTGTCAAGCTTTGGAAGGAAAATTAACTGCAGTCTATAAATGGGCCAAAGAGTATCTTGGATTAAGATTTCAGTCTGTTGCCTCCAATAGACCAATACAAACTCCAGAACATACGAGTGGTTCGAACCTACCTCCACAAGACCCTAAGGATACTGCATCCCAGTCAATAATGGATTCATACACGAAGTGGAAACAACTAAAATCTCAGGCATCATTATATGAATCAGAAACTAAACAAAACGAAGTGGCATCAGGAATTGCGGGGAACCCTCGTAGCAATTATATGAGTTCTTTCAGCATTACACCAAAAGAGAAGACGACTCCACTTGAGTCAGCCGTCTCTGATAAGATGAAAGCAAAAGAGAAAATGGTGGGGTGCCGACCTCCTAGAGCATTCTCTAATGGAGGAACCATTTCCACCAGCAAAAAAACTGATATGAAGGCGCCTGTAGGTAAGCCAACAACATCAAAGAAGGTAAAGGGTGTCCAGAAAGTAGCTTCAGTTTTTTCTGTCAAGAACTCACGATACTTATCCTTTCTACAAGAAAACAGGTTAGTCGAAATGCCATCTGATAGTTGCTCTTCCTCGTCCTCAGAATCCGACAACGCGTGA 2154 0.4099 MKEFNDTLKYIASIRSRAEPYGICRIVPPTSWKPPCSLEEKNVWEGTEFVAQIQRIDGIQVQHAEENVASCEDTRAKRRRVSQVDLDSQVANASTCTANSQDVEDCVSEPCPKFSLKTFKNFADEFKIQYFDHKGKNKVVDSDLNLATNQHKWEPSVDNIEGEYRRIVQNPTEEIEVLHGNILEAGGSSSGFPTVVDSVEEHTSAEYSKSGWNLNNINSLPGSLLSFESSGASLNFGPRIHVGMCFTQLNWKVEEHHLYLLSYLHLGEPKVWYSIPQRYAVNYETIRKKYLSALYAKQPDIDENLMMQLSCSILKAEGIPVYRCVQYPREFVLVFPGAYHSGFDCGFNCSQSVNFAPLEWLLHGLNVVELYCEKRKKTLISYDKLLLEAAKEAVRLHWEIDLCMKDTPDKLTSKDVYQRNGILAKVLGSRVKSESIKRQYLCGSLKSQRIDESFDAGGKRECGICLRDLYLSAVRCLCSEDKFACLDHAKLLCPCCWSDKILLYRYEISELNVLCQALEGKLTAVYKWAKEYLGLRFQSVASNRPIQTPEHTSGSNLPPQDPKDTASQSIMDSYTKWKQLKSQASLYESETKQNEVASGIAGNPRSNYMSSFSITPKEKTTPLESAVSDKMKAKEKMVGCRPPRAFSNGGTISTSKKTDMKAPVGKPTTSKKVKGVQKVASVFSVKNSRYLSFLQENRLVEMPSDSCSSSSSESDNA 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc283g00008 717 ProSiteProfiles JmjC domain profile. 206 372 IPR003347 -
Stsc283g00008 717 SUPERFAMILY Clavaminate synthase-like 110 399 - -
Stsc283g00008 717 Pfam jmjN domain 1 28 IPR003349 -
Stsc283g00008 717 ProSiteProfiles JmjN domain profile. 1 35 IPR003349 -
Stsc283g00008 717 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 637 - -
Stsc283g00008 717 MobiDBLite consensus disorder prediction 634 670 - -
Stsc283g00008 717 Pfam JmjC domain, hydroxylase 241 355 IPR003347 -
Stsc283g00008 717 MobiDBLite consensus disorder prediction 545 568 - -
Stsc283g00008 717 Gene3D Cupin 1 356 - -
Stsc283g00008 717 SMART cupin_9 206 372 IPR003347 -
Stsc283g00008 717 SMART JmjN_1 1 34 IPR003349 -
Stsc283g00008 717 Pfam C5HC2 zinc finger 462 512 IPR004198 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc283g00008 Stsc-Chr283 47880 51691 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc283g00008 2 550 JUMONJI Transcription Factor Family AT1G08620 46.931 3.48e-162 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Stsc283g00008 JmjC 2.6e-31 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc283g00008 K11446 - aip:107646673 1031.17