Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc283g00006 ATGCATATAGGCCAAACGAATACAACTTCAGCGCAATGTCTCATCAACAGCATTTCACGATTCATTCATCTCGTTTCTTGCCATGCGGTAAAACCTACCCCCCTTAAGAAGAACTTTGATAATATGGTTAGTGTGTTGAAGCGTTTGAAACCAGTGCTCGATGATGTTGCGGATCACAATCTCCCTTTGGAGGAAAATCTCTATAGAGAATGTGAGGAATTGGATATGTTGGTTAATGAAGCTAGAGAGCTCATTGAAAAATGGGGCCCAAAGATGAGCAAGATTCACAGCGTTCTTCAAAGTGGGGAATTGCTGATCAAGTTACAAAGTGCTTCATTTGATATTTGTCGCATAATCATTAAATCCCAAAAGTCACCTTCAAATGCTGCAGTTTTGTCCAATCTTCAGCAATATACGCAGGAACTTCAGTGTCTCAAGAAGGAGACAGCAGTGGTTTATATAGAAGAAGCACTTAGAAACCAAAGGAATAATGTTCAACCTTCAAATGATTGTCTAAAAGGAATTATTGAGTTACTTCACCTTACATCAAACCAAGAGCTTCTAAAAGAAAATATAGCTGTGGAAAAGGAAAGGTTGAATGCTGGAGTCAATAAAATGAAAGGGGAATTGGATGAAGTAAACCAAATTGTGAATCTTGTCTGCAACTTAGGCGAGTATGTGATGAAATTTGAGTTCCGTGAAGTCAAACATGGTGTCTCTATCCCACAGTACTTTAGATGTCCTTTATCATTGGAACTTATGTCAGACCCTGTTATCTTGGCTTCTGGTCAAACATATGAGAGGCAGTCCATTCAAATGTGGCTTGATCATGGTCTGGCTGTTTGTCCCAAGACACATCAGAGACTTTCCCATACAAACCTCATTCCGAATTATACCGTGAAAGCTATGATAGCAAACTGGTGTGAGGAAAATAATGTCAAACTTCCCCGTAACTCTAACCTCCAAAGTTCTTACCATGTTTCGACCCCTTCAGATCATTCGCTTACACCAGATTTTGATCGTCTGTGTAGTTTTGGGTCTTCAAATAGTAGCTATACCACTTCAAAAACTGGAGGTGCATTTGAGATTGAGAAGCAAAATGGTGATGCTTCTTTCAGAATGAGTGGAGAATCAAATGGATGCAGGAGTGGAGAGACAGAAAATTTTGAGTACTCATCCCCTGCGGCTTCATGTAGTCACAGCAGAAGTGAATCATTGTCGAGTTCTATTTCTAGTACTGATATTGTATATCCAGTTTCAAAAGGGGTGTCAGCCATACCTAATAAGCATCAAAATGTGTTGTGCAGAGAAATCACAAATGAGCATCCTGCTTCTCCTGCAAATAAGGAATCAGAGTTTTCTACTCCTTTTTCAGGAAAGCAATCTGAAATCCCTGGATCCAAAATTGTAGAGATGGAGAATGGAAATAATTATAGAAAGAATGATAATGTTATTAATAGCCACACAAAAGTTGATTCAGTTCCTGCTTCCAACTTACAACACGATGAACTAACTACCACATCCCATGTCAATAAGTTGATTGAAGACCTTAAGAGTAAGTCAAATGAGGTGCAAACTGCTGCTGCAGAAGAATTGAGGCTCCTTACCAAGAATAACATGGAAAACCGTGTCCTTGTTGGGAAGTGTGGCGCTGTTACACCATTACTATCACTGCTGTGTTCGAATGTGAGGATAACACAAGAGCATGCCGTGACAGCTCTTCTGAATTTGTCAATTTACGAAGGCAACAAGTCGTTGATTATGGAAGCAGGGGCCATAGAACCCCTGATCCATGTTTTGAAGGCAGGAAATGATGGCGCCAAGGAGAATTCTGCGGCTGCATTGTTCAGTCTCTCCATAACAGAAAACAATAAGGAAAAAATTGGTCGTTCGGGTGCAGTTAAAGCTTTGGTGGAACTTCTAGCCTCAGGAACACTAAGGGGAAAGAAGGATGCTGCCACTGCCTTATTTAACTTATCAATATTTCACGACAATAAAGCTCGGATAGTTCAAGCTGGAGCTGTGAAGTATCTGACTCAGTTATTGGATCCAGCTGACAGAATGGTTGACAAGGCTGTTGCTCTTTTGGCAAATCTGTCAACAATTCTGGAAGGTCGAATAGAAATAACAAGGCAAGGAGGAATCCCTTTGCTAGTTGAAATTCTTGAGTCAGGTTCTCAGAGGGGAAAGGAAAATGCAGCTTCTATTATCTTCCAACTATGCCTTCATAGTCCTAAGTTTTGTACCCTCGTCCTGCAAGAAGGAGCTGTACCACCCCTAGTTGCATTATCTCAGTCCGGCACACCAAGAGCGAAAGAAAAGGCGCAACAGCTACTCAGTCATTTCCGTAATCAGCGCGAAGGGGCTGCCGGGAAGGGAAGATCATGA 2388 0.4121 MHIGQTNTTSAQCLINSISRFIHLVSCHAVKPTPLKKNFDNMVSVLKRLKPVLDDVADHNLPLEENLYRECEELDMLVNEARELIEKWGPKMSKIHSVLQSGELLIKLQSASFDICRIIIKSQKSPSNAAVLSNLQQYTQELQCLKKETAVVYIEEALRNQRNNVQPSNDCLKGIIELLHLTSNQELLKENIAVEKERLNAGVNKMKGELDEVNQIVNLVCNLGEYVMKFEFREVKHGVSIPQYFRCPLSLELMSDPVILASGQTYERQSIQMWLDHGLAVCPKTHQRLSHTNLIPNYTVKAMIANWCEENNVKLPRNSNLQSSYHVSTPSDHSLTPDFDRLCSFGSSNSSYTTSKTGGAFEIEKQNGDASFRMSGESNGCRSGETENFEYSSPAASCSHSRSESLSSSISSTDIVYPVSKGVSAIPNKHQNVLCREITNEHPASPANKESEFSTPFSGKQSEIPGSKIVEMENGNNYRKNDNVINSHTKVDSVPASNLQHDELTTTSHVNKLIEDLKSKSNEVQTAAAEELRLLTKNNMENRVLVGKCGAVTPLLSLLCSNVRITQEHAVTALLNLSIYEGNKSLIMEAGAIEPLIHVLKAGNDGAKENSAAALFSLSITENNKEKIGRSGAVKALVELLASGTLRGKKDAATALFNLSIFHDNKARIVQAGAVKYLTQLLDPADRMVDKAVALLANLSTILEGRIEITRQGGIPLLVEILESGSQRGKENAASIIFQLCLHSPKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGAAGKGRS 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc283g00006 795 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 591 633 IPR000225 GO:0005515
Stsc283g00006 795 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Stsc283g00006 795 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 550 592 IPR000225 GO:0005515
Stsc283g00006 795 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 315 IPR013083 -
Stsc283g00006 795 Coils Coil 128 148 - -
Stsc283g00006 795 SUPERFAMILY ARM repeat 503 782 IPR016024 -
Stsc283g00006 795 Coils Coil 510 530 - -
Stsc283g00006 795 FunFam RING-type E3 ubiquitin transferase 493 788 - -
Stsc283g00006 795 Gene3D - 585 792 IPR011989 -
Stsc283g00006 795 FunFam RING-type E3 ubiquitin transferase 240 314 - -
Stsc283g00006 795 Coils Coil 64 84 - -
Stsc283g00006 795 SUPERFAMILY RING/U-box 239 315 - -
Stsc283g00006 795 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 632 674 IPR000225 GO:0005515
Stsc283g00006 795 SMART arm_5 539 579 IPR000225 GO:0005515
Stsc283g00006 795 SMART arm_5 702 742 IPR000225 GO:0005515
Stsc283g00006 795 SMART arm_5 580 620 IPR000225 GO:0005515
Stsc283g00006 795 SMART arm_5 662 701 IPR000225 GO:0005515
Stsc283g00006 795 SMART arm_5 621 661 IPR000225 GO:0005515
Stsc283g00006 795 MobiDBLite consensus disorder prediction 444 462 - -
Stsc283g00006 795 Pfam Armadillo/beta-catenin-like repeat 541 578 IPR000225 GO:0005515
Stsc283g00006 795 Pfam Armadillo/beta-catenin-like repeat 623 660 IPR000225 GO:0005515
Stsc283g00006 795 Pfam Armadillo/beta-catenin-like repeat 582 619 IPR000225 GO:0005515
Stsc283g00006 795 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 673 714 IPR000225 GO:0005515
Stsc283g00006 795 PANTHER U BOX DOMAIN-CONTAINING 34 783 - -
Stsc283g00006 795 MobiDBLite consensus disorder prediction 443 463 - -
Stsc283g00006 795 Pfam U-box domain 241 312 IPR003613 GO:0004842|GO:0016567
Stsc283g00006 795 CDD RING-Ubox_PUB 242 294 IPR045210 -
Stsc283g00006 795 Gene3D - 459 584 IPR011989 -
Stsc283g00006 795 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc283g00006 Stsc-Chr283 19548 24097 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc283g00006 12 795 U-box Gene Family AT3G54790 52.771 0.0 714
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc283g00006 - - gmx:100804684 1104.35