Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc280g00001 ATGGAAAGTGATGGTACGGAGCATCTTGTCAATGATGACAAAAGTGATGGTATGGAGCATCTTGTCGATGATGACAAAAGTGATGGTATGGAGCATCTTGATCATGATAAAAGTGATGGTATGGAGCATTCTGATGATGACAGTAGTGATGATTCTAGTAGTGACAGTGACAGCGGTAATGATGAATTACAAGAGGATCAAAGAAAAGAGATTGATGTTAGTCACAATGAAGAGGCTACCATGTTTAAGAATAAAGGTGAATTGAGTAAAGAGGAAGTTTTGCGAATGGAGTTTAACACTCACGAAAAGGCCTATGATTTTTATGTGAGTTATGCAAAGAGTGTTGGGTTTGGTGTTCGGAAAGGAGATTTGTCCCGTGATGACGATGGCAGGTTGATAAGACGAAGATTTTTTTGCAATAGGCAAGGCTTGAGGGACAAAAAACATTACATGAGAATTGATAGAAAAAGGGATCAGAAACCAGAGACCAGGACGAATTGTAAAGCAATGTTGAGTATTTACCTTGACAACCAGACCTTAACATGGAGAGTGAGAACCTTTGTGAAAGACCACAACCATGAACTAACACCTGCGGGAATTGATTACATAATGCCGACTACAACTAGTCGTCGGTTAACAACCGCAAAAAAGGCACAAAGTGATGGCATCCATATACATGGGTTCCTGACATTTCAAATCATGGGTTTTATGGTTGGTCAAGCTAGGGCTTTTGCTGGAGNNNNNNNNNNTGTAGATAAACAAAGATGTCCTAAGATAGCTGATGGTGATGCACTTGCAGCTATTAGCTATTTGCAGGGTAAGGCAGACTCTGATCCGACATTGTTTGCCAGGTACACCACTACAGATGATGATCAATTGGGGCACTTGTTTTGGGCTGATGGCTTAAGTCAAGTTGACTATGAGTACTTTGGGGATGTGGTTGCACTTGATACAAAATACAAAGAAAACATGTACCACAAACGCTTAGTTATCTTTTCTGGTACTAATCATCATCGACAAACTTGTATTTTCGCATGTGCTTTGCTAGCTGATGAGCGGGCTGACACATATAAATGGGCATTGGAGAATTTCTTAGATGCAATGGAGAAGAAACACCCAAGTGCAGTGGTAACTGATGATAATGAGGCCATGAGGGAAGCAATTCAGGCTGTGTTGCCAAATACTGCCCATCGGCTATGTGCTTGGCATCTTCAAAAAGGTGCAGAGGACAACATCAAGGATACTGATTTTGATGAGGCTTTCAAGAAATCTATTTATACCAACTTTGATCCCGATGAGTTTGAGGAGTATTGGCGCAACATGATACAAAAGTTTGAGGTATATGACAGCATGTGGGTAGAGGAGACATATAAGAAGAAGGAAATGTGGGCCACTACTTACCTTCGTGATAAGTCCTATTCTGGAATAAGAGCATCATCACGATGTGAGGGCTTAAACCCATTGATGAAGAAATATATCAAGGCAAGGCACAATATACTCGAATTGGTACAACACTTTGAGCTGGCATTGAAGGAATTTAGGAACAATGAATTGGTAGCAGAGTTCAATTCCATGTACAATGAGCCTGTTTTGACAACTGCTTTAGAATCAATTGAGCGCAAGGCTGCTAAAGTTTATACAAGGGAAATTTTCAAAGAAGTGCAGAAAGAGTTAGAAGGGGCTGCTTTACTATTTGTTGTTGGATGTGAAAATGTTTCAACTACTGCCACGTTTAAATTGTCCAAGTATGGTAAGCCTGGTTGGGAATACAAGGTGATATATGACAGAGAGTCAGAGAAATTTGAATGCCAGTGTTGCCTATGGAATACCCATGGCATTCCCTGCAGTCACATATTTTGTGTTATGATTTATGAACATATTGCAGAATTGCCTGAAAAGTTGATTCTTAAAAGATGGACTCAAGCTGCAAAGTCTTTTAATGAGCTTCCAGATGAAGAAGACGAGGTGAACGATAAAAAGTTCCTGTTTCGTTATGGTGCATTATGTGCTGCAAGTAATTGGATGTCATTTCTGGCAGCAAGAAAGTTACAAAATTTTCTTGAAACAAAAGATGAAATTTATAGAATCACAGCTAAGCTAGAGCATAAAGGATGTATGGTGGATACCAATTCATTTTCCTTACCCAGGAATACCATGGGTGACACAACCACTCAAAAGAATGATAAGAAGCGCCGTCGTTGCAAAACCTGCAACAAGATGGGTCATACAAAGAAAACTTGTTCAAGGGCAAAGAACAAAAGGTCTCGTCTTCGGGAAGGTGATCTCAGTCCGTCTTCAATGTCGGATAATCCTCGAAATGCAGGTCATACCACAAATAGCACAGCGGATCCTCCAAATGCAGGTGCTGCAACACATAACACTGTGGATGATCCTCCAAATGCAGGTCCTGCAACAAATAACGAGGTGGGGCACCCTCCAACAGACCCATCTACTGCCATGACACAATCGCTAGCCGCGAATCATGCTGCTGCAGCCTCTCGTTTTGGGGTATGGGGACCCCAATTTCTTCTTCCTGGTCCTGGTCAACCTTGTTTTGCTGCAAATATAGGCCAGCAATACTATCTTGCAAATCAAGGTGCTAGATATTATCCCCTTGCTCCAGCTCAACAGCAATTTCTTAGACCGCAAGGTTTAGTGCAGCGGTTTGTTCCTCAAGGGGTATTTCCCCAGCAATATGTCGGTGGTCCCGAACTTCAACCCCAAGAGTTAGCCCAACAAAGACGTGCCTTAGCCCAACAAAGACGTGCCAAAGCTCGTGCTAATCGGTGA 2790 0.4165 MESDGTEHLVNDDKSDGMEHLVDDDKSDGMEHLDHDKSDGMEHSDDDSSDDSSSDSDSGNDELQEDQRKEIDVSHNEEATMFKNKGELSKEEVLRMEFNTHEKAYDFYVSYAKSVGFGVRKGDLSRDDDGRLIRRRFFCNRQGLRDKKHYMRIDRKRDQKPETRTNCKAMLSIYLDNQTLTWRVRTFVKDHNHELTPAGIDYIMPTTTSRRLTTAKKAQSDGIHIHGFLTFQIMGFMVGQARAFAGXXXXVDKQRCPKIADGDALAAISYLQGKADSDPTLFARYTTTDDDQLGHLFWADGLSQVDYEYFGDVVALDTKYKENMYHKRLVIFSGTNHHRQTCIFACALLADERADTYKWALENFLDAMEKKHPSAVVTDDNEAMREAIQAVLPNTAHRLCAWHLQKGAEDNIKDTDFDEAFKKSIYTNFDPDEFEEYWRNMIQKFEVYDSMWVEETYKKKEMWATTYLRDKSYSGIRASSRCEGLNPLMKKYIKARHNILELVQHFELALKEFRNNELVAEFNSMYNEPVLTTALESIERKAAKVYTREIFKEVQKELEGAALLFVVGCENVSTTATFKLSKYGKPGWEYKVIYDRESEKFECQCCLWNTHGIPCSHIFCVMIYEHIAELPEKLILKRWTQAAKSFNELPDEEDEVNDKKFLFRYGALCAASNWMSFLAARKLQNFLETKDEIYRITAKLEHKGCMVDTNSFSLPRNTMGDTTTQKNDKKRRRCKTCNKMGHTKKTCSRAKNKRSRLREGDLSPSSMSDNPRNAGHTTNSTADPPNAGAATHNTVDDPPNAGPATNNEVGHPPTDPSTAMTQSLAANHAAAASRFGVWGPQFLLPGPGQPCFAANIGQQYYLANQGARYYPLAPAQQQFLRPQGLVQRFVPQGVFPQQYVGGPELQPQELAQQRRALAQQRRAKARANR 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc280g00001 929 MobiDBLite consensus disorder prediction 1 44 - -
Stsc280g00001 929 ProSiteProfiles Zinc finger SWIM-type profile. 590 626 IPR007527 GO:0008270
Stsc280g00001 929 MobiDBLite consensus disorder prediction 1 83 - -
Stsc280g00001 929 MobiDBLite consensus disorder prediction 729 752 - -
Stsc280g00001 929 MobiDBLite consensus disorder prediction 810 824 - -
Stsc280g00001 929 Pfam MULE transposase domain 313 406 IPR018289 -
Stsc280g00001 929 Coils Coil 910 929 - -
Stsc280g00001 929 MobiDBLite consensus disorder prediction 45 60 - -
Stsc280g00001 929 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 85 684 IPR031052 GO:0006355
Stsc280g00001 929 MobiDBLite consensus disorder prediction 713 824 - -
Stsc280g00001 929 MobiDBLite consensus disorder prediction 61 83 - -
Stsc280g00001 929 MobiDBLite consensus disorder prediction 761 788 - -
Stsc280g00001 929 Pfam FAR1 DNA-binding domain 106 196 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc280g00001 Stsc-Chr280 5729 9438 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Stsc280g00001 MULE 1.8e-23 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc280g00001 - - adu:107477751 1594.71