LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc27g00038	ATGACTAATCTTTCATCATGCTTCCTTATTCTCTTTGCTCTTTCTCTTCTTCTCACACCCAACTTTGTTTTCTCCTCTGCTGTTCAAGACCCTGAACTAGTCGTACAAGACGTGCAAAGGAGTATCCAAAATGCGACTAGGAGGAAGTTGGGATATCTATCATGTGGAACTGGCAACCCCATTGACGATTGTTGGAGGTGCGACCCGAATTGGGAGAACAACCGGCAAAGGCTAGCAGATTGCGCGATTGGGTTCGGGAAGGACGCCATTGGAGGAAGAAATGGTAGAATCTATGTGGTGACTGACCCTGGTGACGATGACGCCGTGAACCCAAGGCCAGGAACTATAAGGCATGCTGCAATTCAAGATGAGCCACTTTGGATCATTTTCAAGAGAGATATGGTCATCACTTTGAAGGAGGAGCTTTTGGTCAATTCATTCAAGACTATTGATGGCAGGGGTGCTAGTGTTCACATTGCTGGTGGGGGATGCATCACCATACATTATGTGAGCAACGTAATAATACATGGGATTCACATACATGATTGCAAGCCAACAGGGAACACAAATATAAGAGACTCACCAGAACATTCAGGGTTTTGGACAGTGTCAGATGGAGATGGAGTTTCGATATTCAACTCAAAGCATATATGGGTTGATCATTGCTCATTGTCTAATTGCCGTGATGGTCTCATTGATGCCATCCATGGATCCACAGCTATAACCATCTCTAACAACTACATGACCCATCATGACAAGGTCATGCTTTTGGGACACAGTGATTCCTACACACAAGACAAGGATATGCAGGTCACAATTGCATTCAATCATTTTGGTGAAGGCCTTGTCCAAAGAATGCCAAGGTGTAGGCACGGGTATTTCCATGTGGTGAACAATGACTATACTCACTGGGAAATGTACGCCATCGGAGGGAGTGCCAACCCAACCATCAACAGCCAAGGCAACCGTTTTCTTGCACCCGATAACCGTTTCAGCAAGGAAGTTACAAAGCATGAAGACGCGCCTCAGAGCGAGTGGGCCAACTGGAACTGGAGATCTGACGGAGACATGTTCTTGAACGGTGCATTCTTCAGGGCCTCCGGCGCCGGTGCTTCCTCCGCCCCCTATGCTCGTGCCTCCAGCCTCAGCGCCAGACCTTCTTCTCTCGTTGCCTCCATAACCACCACTGCCGGTGCTCTTACCTGTCGCAAAGGCTCACGCTGTTGA	1227	0.4792	MTNLSSCFLILFALSLLLTPNFVFSSAVQDPELVVQDVQRSIQNATRRKLGYLSCGTGNPIDDCWRCDPNWENNRQRLADCAIGFGKDAIGGRNGRIYVVTDPGDDDAVNPRPGTIRHAAIQDEPLWIIFKRDMVITLKEELLVNSFKTIDGRGASVHIAGGGCITIHYVSNVIIHGIHIHDCKPTGNTNIRDSPEHSGFWTVSDGDGVSIFNSKHIWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDNRFSKEVTKHEDAPQSEWANWNWRSDGDMFLNGAFFRASGAGASSAPYARASSLSARPSSLVASITTTAGALTCRKGSRC	408

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc27g00038	408	Gene3D	-	58	401	IPR012334	-
	Stsc27g00038	408	SUPERFAMILY	Pectin lyase-like	59	399	IPR011050	-
	Stsc27g00038	408	FunFam	Pectate lyase	58	401	-	-
	Stsc27g00038	408	SMART	amb_all	133	330	IPR002022	-
	Stsc27g00038	408	PANTHER	PECTATE LYASE 18-RELATED	27	406	IPR045032	GO:0030570
	Stsc27g00038	408	PRINTS	Pollen allergen Amb family signature	141	157	IPR018082	-
	Stsc27g00038	408	PRINTS	Pollen allergen Amb family signature	307	326	IPR018082	-
	Stsc27g00038	408	PRINTS	Pollen allergen Amb family signature	105	130	IPR018082	-
	Stsc27g00038	408	PRINTS	Pollen allergen Amb family signature	379	402	IPR018082	-
	Stsc27g00038	408	PRINTS	Pollen allergen Amb family signature	285	304	IPR018082	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc27g00038	Stsc-Chr27	203109	206732	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc27g00038	1	408	Polysaccharide Lyase	AT5G63180	74.634	0.0	630

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc27g00038	K01728		-	gmx:100794814	734.176

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