Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc27g00038 ATGACTAATCTTTCATCATGCTTCCTTATTCTCTTTGCTCTTTCTCTTCTTCTCACACCCAACTTTGTTTTCTCCTCTGCTGTTCAAGACCCTGAACTAGTCGTACAAGACGTGCAAAGGAGTATCCAAAATGCGACTAGGAGGAAGTTGGGATATCTATCATGTGGAACTGGCAACCCCATTGACGATTGTTGGAGGTGCGACCCGAATTGGGAGAACAACCGGCAAAGGCTAGCAGATTGCGCGATTGGGTTCGGGAAGGACGCCATTGGAGGAAGAAATGGTAGAATCTATGTGGTGACTGACCCTGGTGACGATGACGCCGTGAACCCAAGGCCAGGAACTATAAGGCATGCTGCAATTCAAGATGAGCCACTTTGGATCATTTTCAAGAGAGATATGGTCATCACTTTGAAGGAGGAGCTTTTGGTCAATTCATTCAAGACTATTGATGGCAGGGGTGCTAGTGTTCACATTGCTGGTGGGGGATGCATCACCATACATTATGTGAGCAACGTAATAATACATGGGATTCACATACATGATTGCAAGCCAACAGGGAACACAAATATAAGAGACTCACCAGAACATTCAGGGTTTTGGACAGTGTCAGATGGAGATGGAGTTTCGATATTCAACTCAAAGCATATATGGGTTGATCATTGCTCATTGTCTAATTGCCGTGATGGTCTCATTGATGCCATCCATGGATCCACAGCTATAACCATCTCTAACAACTACATGACCCATCATGACAAGGTCATGCTTTTGGGACACAGTGATTCCTACACACAAGACAAGGATATGCAGGTCACAATTGCATTCAATCATTTTGGTGAAGGCCTTGTCCAAAGAATGCCAAGGTGTAGGCACGGGTATTTCCATGTGGTGAACAATGACTATACTCACTGGGAAATGTACGCCATCGGAGGGAGTGCCAACCCAACCATCAACAGCCAAGGCAACCGTTTTCTTGCACCCGATAACCGTTTCAGCAAGGAAGTTACAAAGCATGAAGACGCGCCTCAGAGCGAGTGGGCCAACTGGAACTGGAGATCTGACGGAGACATGTTCTTGAACGGTGCATTCTTCAGGGCCTCCGGCGCCGGTGCTTCCTCCGCCCCCTATGCTCGTGCCTCCAGCCTCAGCGCCAGACCTTCTTCTCTCGTTGCCTCCATAACCACCACTGCCGGTGCTCTTACCTGTCGCAAAGGCTCACGCTGTTGA 1227 0.4792 MTNLSSCFLILFALSLLLTPNFVFSSAVQDPELVVQDVQRSIQNATRRKLGYLSCGTGNPIDDCWRCDPNWENNRQRLADCAIGFGKDAIGGRNGRIYVVTDPGDDDAVNPRPGTIRHAAIQDEPLWIIFKRDMVITLKEELLVNSFKTIDGRGASVHIAGGGCITIHYVSNVIIHGIHIHDCKPTGNTNIRDSPEHSGFWTVSDGDGVSIFNSKHIWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDNRFSKEVTKHEDAPQSEWANWNWRSDGDMFLNGAFFRASGAGASSAPYARASSLSARPSSLVASITTTAGALTCRKGSRC 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc27g00038 408 Gene3D - 58 401 IPR012334 -
Stsc27g00038 408 SUPERFAMILY Pectin lyase-like 59 399 IPR011050 -
Stsc27g00038 408 FunFam Pectate lyase 58 401 - -
Stsc27g00038 408 SMART amb_all 133 330 IPR002022 -
Stsc27g00038 408 PANTHER PECTATE LYASE 18-RELATED 27 406 IPR045032 GO:0030570
Stsc27g00038 408 PRINTS Pollen allergen Amb family signature 141 157 IPR018082 -
Stsc27g00038 408 PRINTS Pollen allergen Amb family signature 307 326 IPR018082 -
Stsc27g00038 408 PRINTS Pollen allergen Amb family signature 105 130 IPR018082 -
Stsc27g00038 408 PRINTS Pollen allergen Amb family signature 379 402 IPR018082 -
Stsc27g00038 408 PRINTS Pollen allergen Amb family signature 285 304 IPR018082 -
Stsc27g00038 408 PRINTS Pollen allergen Amb family signature 205 226 IPR018082 -
Stsc27g00038 408 PRINTS Pollen allergen Amb family signature 81 98 IPR018082 -
Stsc27g00038 408 PRINTS Pollen allergen Amb family signature 349 373 IPR018082 -
Stsc27g00038 408 Pfam Pectate lyase 140 324 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc27g00038 Stsc-Chr27 203109 206732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc27g00038 1 408 Polysaccharide Lyase AT5G63180 74.634 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc27g00038 K01728 - gmx:100794814 734.176