Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc27g00035 ATGGTTATTACGATGATGATGTTTGTGACAGCCTTCTTGACTATTCTTATAACTCTTCTATTGAAGTCTGCTTTTGATACGATCTCATGGTACTTGCTCACCCCACTACGCATCAAGAGAATCATGGACAAACAAGGTGTTACTGGCCCTAAACCCTATTTTCTCACCGGCAACATTCCAGACATGGCTTCTCTTTCTTCGGCAGCTGTTTCTCACGACATGAAAAACATTAGCCACGACATTGTTGGTCGCCTTTTGCCCCATTTTGTTGCATGGTCCAATCAATATGGAAAGAGATTTATATATTGGAATGGAGTAGAGCCAAGGCTATGCCTAACGGATACCGAATTGATAAAACAATTCTTGTCGAAATATAATAGTGTAACCGGAAAATCATGGCAACAACAAGAGGGCTCTAAAAATTTCATTGGGAGAGGCTTGTTGATGGCTAACGGCGAAGATTGGTACCGTCAACGTCACATGGTTGCGCCGGCATTCATGGGAGACAGGCTCAAGGAATATGGTGTGCACATGGTGGAATGTACAAAGGAGATAATAAAATCATTGGAGAATGCATTGGTGAGTGGAGAATCGGAGGTGGAGATTGGAGAATACATGACTGAGCTGACTGCAGATATAATATCAAGGACTGAGTTTGGGACAAACTACAATAAGGGAAAGCAAATATTTCATCTCCTTACAAAGCTTCAGTCTCTTTGTGCTCAAGCCACTCGCCATCTTTGCTTTCCTGGAAGCAGGTATTTTCCTAGTAGCTATAACAAGGAGATAAAGACATTGAAGGTGGAAGTGGAGAAGCTATTGCTGGAGATAATAGAAAGCAGAAAGGATTGTGTTGAGGTTGGTAAGACGGATTCATTTGGGAAGGATTTGTTGGGTATTCTTCTTGAAGAGATGAAAAACAAAGGTGGGAGCTTGAAGAATTTGCAAGTTGTTATGGATGAATGCAAAACGTTCTTCTTTGCTGGCCATGAAACAACAGCACTATTGCTCACTTGGACAACTATGTTGCTTGCAAGCAATCCACAATGGCAACAAAAAGTGAGAGATGAAGTTAGGAACCTCTTCAATGGTGAAACCCCTCTCATTGATCAACTATCTAAGCTTACTGTGTTAAACATGGTGATCAACGAATCAATGAGGCTATATCCTCCAGCAACTGTGCTACCAAGAATGGCATTTGAAGACATTACATTAGGTGATCTTTACATCCCTAAAGGCTTATCAATTTGGATTCCAGTGTTAGCCATTCACCATAGCCAAGAACTCTGGGGTCAAGATGCAAATGAATTCAACCCAGACAGGTTTGCTTCAAAATCATTCATCCCTGGCAGGTTCATACCTTTTGCTTCTGGCCCAAGAAATTGTGTTGGACAATCCTTTGCAATCATGGAAGCTAAGATTATATTGTCCATGCTAATCTCCAAGTTTAGCTTCACCATTTCAGATAATTACAGGCATGCCCCTGTCACTGTTCTCACAATTAAGCCTAAGTATGGAGTTCAACTTTGTTTCAAGCCATTGGATCCATAA 1551 0.412 MVITMMMFVTAFLTILITLLLKSAFDTISWYLLTPLRIKRIMDKQGVTGPKPYFLTGNIPDMASLSSAAVSHDMKNISHDIVGRLLPHFVAWSNQYGKRFIYWNGVEPRLCLTDTELIKQFLSKYNSVTGKSWQQQEGSKNFIGRGLLMANGEDWYRQRHMVAPAFMGDRLKEYGVHMVECTKEIIKSLENALVSGESEVEIGEYMTELTADIISRTEFGTNYNKGKQIFHLLTKLQSLCAQATRHLCFPGSRYFPSSYNKEIKTLKVEVEKLLLEIIESRKDCVEVGKTDSFGKDLLGILLEEMKNKGGSLKNLQVVMDECKTFFFAGHETTALLLTWTTMLLASNPQWQQKVRDEVRNLFNGETPLIDQLSKLTVLNMVINESMRLYPPATVLPRMAFEDITLGDLYIPKGLSIWIPVLAIHHSQELWGQDANEFNPDRFASKSFIPGRFIPFASGPRNCVGQSFAIMEAKIILSMLISKFSFTISDNYRHAPVTVLTIKPKYGVQLCFKPLDP 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc27g00035 516 SUPERFAMILY Cytochrome P450 49 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc27g00035 516 Pfam Cytochrome P450 89 490 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc27g00035 516 PRINTS E-class P450 group I signature 337 363 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc27g00035 516 PRINTS E-class P450 group I signature 452 462 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc27g00035 516 PRINTS E-class P450 group I signature 420 444 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc27g00035 516 PRINTS E-class P450 group I signature 93 112 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc27g00035 516 PRINTS E-class P450 group I signature 462 485 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc27g00035 516 PRINTS E-class P450 group I signature 209 227 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc27g00035 516 PRINTS E-class P450 group I signature 317 334 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc27g00035 516 Gene3D Cytochrome P450 34 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc27g00035 516 Coils Coil 263 283 - -
Stsc27g00035 516 PANTHER CYTOCHROME P450 FAMILY MEMBER 21 506 - -
Stsc27g00035 516 PRINTS P450 superfamily signature 453 462 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc27g00035 516 PRINTS P450 superfamily signature 380 391 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc27g00035 516 PRINTS P450 superfamily signature 462 473 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc27g00035 516 PRINTS P450 superfamily signature 328 345 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc27g00035 Stsc-Chr27 186680 190965 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc27g00035 5 376 Cytochrome P450 AT5G38450 63.395 5.34e-160 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc27g00035 K10717 - gmx:100812567 807.364