Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc27g00018 ATGGATCGGGAGTGGGGTTCCAAGCCAGGGAGCGGCGGCGCCGCCTCCGCTCAGAACGAAGCCATCGACCGGCGGGAGCGTCTCCGGCGGCTCGCTCTCGAGACCATTGATCTCGCCAAGGATCCTTATTTCATGCGCAATCACCTTGGAAGCTATGAATGCAAGCTTTGCTTGACTTTGCACAACAATGAAGGAAACTACTTGGCCCATACGCAGGGGAAGCGCCATCAGACCAATTTGGCGAAGCGTGCTGCTCGTGAGGCTAAAGATGCTCCAGCTCAACCTCAACCTCACAAGCGCAAAGTTTCCGTTCGCAAAACAGTCAAGATTGGTCGGCCTGGATATCGAGTGACAAAGCAATATGATCCGGAGACAAAGCAACGATCTCTGCTTTTCCAGATTGAATATCCTGAGATTGAAGACCTAACAAAGCCAAGACACCGATTTATGTCTTCTTATGAACAGAGGGTGCAACCATTTGATAAAAGATATCAATATCTTTTGTTTGCCGCTGAACCATATGAAATCATTGCTTTCAAGGTCCCTAGCACGGAGATTGATAAGTCTACACCAAAATTTTTCTCACACTGGGACCCAGATTCAAAGATGTTCACGCTACAATTGTATTTTAAATCCAAGCCACCAGAAGCAAACAAACCACAGCCCCCACCTACAGCCAATGGTACAGCAGCACCCGGTGTTCCACCAAGGCCCATGCCCCCGCCACCTCAAGCTCCACCACCACCACCTCCTCCTCCACAAGGGCTACCTCCTGGTGCACCTATTGGAAATCCTCCTAGAGCGCCTCCACCTCCAATGCCGGGATCATTGCCGCCACCTCCTCCTATGGCAAATGGTCCCAGACCTGCACCTCCAGGTGGAATGCCATCTATCCCACCCCCTCCCCCAGTTGGCAGCGGCACATCAGCAGGTTTTAACATGGGTTCTAGGCCGCCGTCAATGCCCCCACCACCCCAAGGTTTCCCATCCCAACAAATGCAGAATCAGGGTGTCCGACTGCCTCCACCTCCCCCTAACATGGGATAA 1047 0.5244 MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQYDPETKQRSLLFQIEYPEIEDLTKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPPEANKPQPPPTANGTAAPGVPPRPMPPPPQAPPPPPPPPQGLPPGAPIGNPPRAPPPPMPGSLPPPPPMANGPRPAPPGGMPSIPPPPPVGSGTSAGFNMGSRPPSMPPPPQGFPSQQMQNQGVRLPPPPPNMG 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc27g00018 348 PRINTS Proline rich extensin signature 236 252 - -
Stsc27g00018 348 PRINTS Proline rich extensin signature 215 236 - -
Stsc27g00018 348 PRINTS Proline rich extensin signature 253 270 - -
Stsc27g00018 348 PRINTS Proline rich extensin signature 271 296 - -
Stsc27g00018 348 Pfam Zinc-finger of C2H2 type 52 76 - -
Stsc27g00018 348 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Stsc27g00018 348 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Stsc27g00018 348 FunFam Splicing factor 3a subunit 2 94 218 - -
Stsc27g00018 348 Gene3D - 93 218 - -
Stsc27g00018 348 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Stsc27g00018 348 MobiDBLite consensus disorder prediction 1 21 - -
Stsc27g00018 348 MobiDBLite consensus disorder prediction 213 348 - -
Stsc27g00018 348 Gene3D Classic Zinc Finger 46 89 - -
Stsc27g00018 348 SMART CactinC_cactus_3 89 217 - -
Stsc27g00018 348 MobiDBLite consensus disorder prediction 216 306 - -
Stsc27g00018 348 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 347 - -
Stsc27g00018 348 SUPERFAMILY beta-beta-alpha zinc fingers 48 82 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc27g00018 Stsc-Chr27 79762 83613 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc27g00018 1 228 C2H2 Transcription Factor Family AT2G32600 89.912 2.77e-144 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc27g00018 K12826 - gmx:100791333 436.417