Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc279g00006 ATGGATGGTGAAAGAAAACTCCTTGCTCCACCAAATGGGGTAGTTGATGGTGTTCAGAAAATTAGAGCACCTCACGGGAGGACGACTGGCCCTACAAGGCGTTCTACAAAAGGGCAATGGACAGCCGAAGAGGATGAGATTTTGCGTAAAGCTGTTCAGCGTTTTAAAGGAAAGAATTGGAAGAAAATAGCTGAGTGTTTCAAGGATAGAACTGATGTCCAGTGCCTGCATAGATGGCAGAAAGTCCTAAATCCCGAACTTGTCAAAGGTCCATGGTCTAAAGAGGAAGATGAAGTAATTATTGAATTAGTGAACCAGTATGGACCTAAAAAGTGGTCTACTATTGCTCAGCATTTACCTGGACGTATTGGTAAGCAATGTCGAGAAAGGTGGCATAATCATCTTAATCCTTCAATAAACAAGGAAGCATGGACACAGGAAGAGGAGTTGGCTCTAATACGTGCTCATCAAATTTATGGGAACAAATGGGCAGAACTAACAAAGTTCTTACCTGGAAGGACAGACAATGCTATAAAAAATCACTGGAACAGTTCTGTAAAAAAGAAATTGGATTCTTACTTGGCATCAGGCTTGATTACTCCGTTACAAAATGTTCCACTTGTTGGAAATCCCAATCAACCCCTGGCCTCAACCTCTTCAAGGTTGCAGTCTAGTGGAGATGAAGCTGGTCATAGGGGAACTGAAGGAGAGGAAGTTTCACAATGTAGCCAAGAGTCAGCTAATGCCGGACAGTTTCAATCTGCCAAAGAGATGAGCATTGTTGTTTTTGAACCCAGAGAGGAATACAGAGGAAATGAAGAATATGGTCTTGGAAAGGGGTATAGTCCTAGTCATCCATCTTGTTCAGAGCCATATTATGTTTCTCTGGACGACATTACTATATCTATCCCAGAGATGCCTCAGCAAGAGACTTCCTCCTCTCAATTCATTGAGCAAAATTACTCACAAGAACCCGGAAATACTGCAGCCGGGGATTGCCAGCATAATTTGCTTTCCTTACCCAATATTTCCTCACTAGATTTTGTGCAGGAATCCACACATTTACAAAATGAGTGTATAGTTCATGCTCCCAGTGAAGGCCATGACATGGCCAATGCTCCATTTCAGACTTCTGCTGCGCTAGGTGTTTCGACATCCATGACACCTGCTATGGACTCGCTACGAGAGAACATGTTGATATCTGATGATGAATGTTGCAGAGTTTTATTTTCAGAGGCAATAAGTGAGGGTGGCCTTTCTTCTGCAGATTATAATAAAGGTGTAAATATGGTCGACATGTCTGGATGCACTTCTATTCTTTGCCAGTCGTCTTTACCATCTACCTCGGTACCTACTGCCAATGATGGTAGGTTGCAGTATTCTTCAGAAGCCAAACAGATGCTTCAGCCTAAGGATCAGCAGTTTGTCTCCAGATCACATGATGTTTATGCTAATGACTTAGCCAGTTCTACTCCTATTTATGGAATAAGTAGTGCAGAGATGCAAGAGGAATCCGATATAGTGAAAGATACTTCAAACTTGATCCCTGTAAATAGTTTTGGCTGTGGACCAGATACTAAGAAAGCTGACCATTCTATCAGAGAAAAGCCTAATGTGCATTCAGAACAGGAAGACACTGGAGCTTTATGTTATGAACCTCCTCGTTTTCCGAGCATGGATATTCCTTTCTTCAGCTGTGATCTTGTACAATCGGGCAGCGATATGCAGCAAGAATTTAGTCCCCTTGGTATTCGCCAGTTCATGATGTCCTCTATGAACTGTCTAACTCCCTTTAGGTTATGGGATTCGCCTTCTTGTGATAAAAGCCCGGATGCTTTGTTGAAAACTGCTGCTAAAACTTTCACGGGTACACCATCAATATTAAAGAAACGACACCGTGATTTTTTGTCTCCTCTATCAGATAAGAGAGTTGACAAGAAACTTGAGACATCCAACTTGATAAAAAACTTTTCCCGTCTGGATGTCATGTTTGATGACTGTGAGACTCAGAAAGCAGATCCACTTTCTTCATCTCCATTGAATAAAATGAACACTGGTACCTCTGGTGGCGGTGATAAAGAAAATCCTGAACAATCTTCTGAAACGGAACAAGTAACTGAGAAAAATGGACAATCAATGTTGGGCGACAATAAGTCAGGAAACGATAAAGATACTACTGATTCTCTGGATAAGACTGAGCAAGGAGGTCTTGATGTTGATTCTAAGATGAAAGATGATGTTAACACTACTGTTGAGGTTGTGCAACAATGTTCTGGAGTCTTGGTTGAACGTGATCCAAATAACCTATTATTGAATTCTCCTAATCAAGTTGGTGTTAAATCAGACATCGTATTAAGTGCTAGAACAAATAAACATGCATGCTCAAGTTTTAACTCTCCTTGCATTCATGTAAAGGAGAATGAAAGAGTTTCAATTGCTGTTACCTGCGTACAGTCCGTTTGTTCAACGGCCACTGTAGAAAATTTGGGTGATCAAATAGGAAACGATGGAGGCTTTGAAACTTGTAACATATTTGGTGATACACCTTTTAGGAGAAGCCTTGAATCACCTTCGGCGTGGAAATCTCCTTGGAAATCTCCCTGGTTCATAAACACATTTCTATCTAGCCCAAGGATTGATACTGAAATTACAATTGAGGATTTTGGGATATTCATGAGCCCATGTGATAGAAGCTATGATGCAATTGGGTTGATGAAACAGGTTAGCGAACAAACTGCTGCTCAATATGCCAATGCTCATGAGATATTGGAAAATGAAACTCCTAAGGCGTTATCAAAAGATGCATCTGGACCTGGAAACAACAGGGATGAGAACAAGGAAAACAATGATCCGCAGAAACAGCCTGGGAACCATTCTCAATTAACTTCAAAAGCTTTGGTGGAGCGACGCGTGCTTGACTTCAGCGAATGTGGATCACCAAGCAAGGGTGAAAGCAGCAAATCATCAACTATGAACTTAGAAAGTCCATCTTCATATTTGAAGGATTGTAGATAG 3015 0.4123 MDGERKLLAPPNGVVDGVQKIRAPHGRTTGPTRRSTKGQWTAEEDEILRKAVQRFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEVIIELVNQYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPSINKEAWTQEEELALIRAHQIYGNKWAELTKFLPGRTDNAIKNHWNSSVKKKLDSYLASGLITPLQNVPLVGNPNQPLASTSSRLQSSGDEAGHRGTEGEEVSQCSQESANAGQFQSAKEMSIVVFEPREEYRGNEEYGLGKGYSPSHPSCSEPYYVSLDDITISIPEMPQQETSSSQFIEQNYSQEPGNTAAGDCQHNLLSLPNISSLDFVQESTHLQNECIVHAPSEGHDMANAPFQTSAALGVSTSMTPAMDSLRENMLISDDECCRVLFSEAISEGGLSSADYNKGVNMVDMSGCTSILCQSSLPSTSVPTANDGRLQYSSEAKQMLQPKDQQFVSRSHDVYANDLASSTPIYGISSAEMQEESDIVKDTSNLIPVNSFGCGPDTKKADHSIREKPNVHSEQEDTGALCYEPPRFPSMDIPFFSCDLVQSGSDMQQEFSPLGIRQFMMSSMNCLTPFRLWDSPSCDKSPDALLKTAAKTFTGTPSILKKRHRDFLSPLSDKRVDKKLETSNLIKNFSRLDVMFDDCETQKADPLSSSPLNKMNTGTSGGGDKENPEQSSETEQVTEKNGQSMLGDNKSGNDKDTTDSLDKTEQGGLDVDSKMKDDVNTTVEVVQQCSGVLVERDPNNLLLNSPNQVGVKSDIVLSARTNKHACSSFNSPCIHVKENERVSIAVTCVQSVCSTATVENLGDQIGNDGGFETCNIFGDTPFRRSLESPSAWKSPWKSPWFINTFLSSPRIDTEITIEDFGIFMSPCDRSYDAIGLMKQVSEQTAAQYANAHEILENETPKALSKDASGPGNNRDENKENNDPQKQPGNHSQLTSKALVERRVLDFSECGSPSKGESSKSSTMNLESPSSYLKDCR 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc279g00006 1004 CDD SANT 91 135 IPR001005 -
Stsc279g00006 1004 MobiDBLite consensus disorder prediction 923 1004 - -
Stsc279g00006 1004 MobiDBLite consensus disorder prediction 209 227 - -
Stsc279g00006 1004 Gene3D - 36 88 - -
Stsc279g00006 1004 MobiDBLite consensus disorder prediction 702 719 - -
Stsc279g00006 1004 SMART sant 36 85 IPR001005 -
Stsc279g00006 1004 SMART sant 88 137 IPR001005 -
Stsc279g00006 1004 SMART sant 140 188 IPR001005 -
Stsc279g00006 1004 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 139 IPR017930 -
Stsc279g00006 1004 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 83 IPR017930 -
Stsc279g00006 1004 ProSiteProfiles Myb-like domain profile. 32 83 IPR001005 -
Stsc279g00006 1004 Pfam Myb-like DNA-binding domain 89 135 IPR001005 -
Stsc279g00006 1004 Pfam Myb-like DNA-binding domain 37 83 IPR001005 -
Stsc279g00006 1004 Pfam Myb-like DNA-binding domain 141 183 IPR001005 -
Stsc279g00006 1004 MobiDBLite consensus disorder prediction 671 695 - -
Stsc279g00006 1004 MobiDBLite consensus disorder prediction 526 545 - -
Stsc279g00006 1004 FunFam Transcriptional activator Myb isoform A 36 88 - -
Stsc279g00006 1004 MobiDBLite consensus disorder prediction 720 742 - -
Stsc279g00006 1004 FunFam Transcriptional activator Myb isoform A 89 141 - -
Stsc279g00006 1004 SUPERFAMILY Homeodomain-like 33 89 IPR009057 -
Stsc279g00006 1004 Gene3D - 142 198 - -
Stsc279g00006 1004 Gene3D - 89 140 - -
Stsc279g00006 1004 PANTHER MYB PROTEIN-RELATED 37 110 - -
Stsc279g00006 1004 MobiDBLite consensus disorder prediction 209 249 - -
Stsc279g00006 1004 Coils Coil 906 926 - -
Stsc279g00006 1004 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 190 IPR017930 -
Stsc279g00006 1004 MobiDBLite consensus disorder prediction 20 40 - -
Stsc279g00006 1004 SUPERFAMILY Homeodomain-like 86 182 IPR009057 -
Stsc279g00006 1004 CDD SANT 40 83 IPR001005 -
Stsc279g00006 1004 ProSiteProfiles Myb-like domain profile. 136 186 IPR001005 -
Stsc279g00006 1004 MobiDBLite consensus disorder prediction 979 997 - -
Stsc279g00006 1004 FunFam Transcription factor MYB3R-2 142 204 - -
Stsc279g00006 1004 ProSiteProfiles Myb-like domain profile. 84 135 IPR001005 -
Stsc279g00006 1004 CDD SANT 143 183 IPR001005 -
Stsc279g00006 1004 MobiDBLite consensus disorder prediction 670 742 - -
Stsc279g00006 1004 MobiDBLite consensus disorder prediction 527 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc279g00006 Stsc-Chr279 50522 55555 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc279g00006 4 1004 MYB Transcription Factor Family AT4G32730 43.868 0.0 722
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc279g00006 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc279g00006 - K09420 gmx:100811335 1375.53