Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc279244g00001 ATGGAATTCGAACAAGGTTCTTACACGATCTTCTTGGATAACCTTGCAGCTTTGATTCTAAAAGGGGAGATATACAAGGAGTTCTGTCGATTTGGAACCATCACTGATGTGTATGTCTTGAGGAAGCGGAGAAGGAAGTGCAAGGGACCATTTGCTTTTATTAGATTTAAAGAATATGAAGGAGCTAAAAGAGCGATGGAATGGAAGAATGGTGCTTATTGGAAAGGAAAGAGAATCCATGTTACGCTGTCAAAGTATAGGAGAAGCAGTGACTGGAGGCCTACAGGTAAGGAGGCTATGGGAAAACGAAAAGCTTTTCATGATAATCGAAGAATCAGAGGAAAAAAAGGGACAATTGAAG 361 0.4044 MEFEQGSYTIFLDNLAALILKGEIYKEFCRFGTITDVYVLRKRRRKCKGPFAFIRFKEYEGAKRAMEWKNGAYWKGKRIHVTLSKYRRSSDWRPTGKEAMGKRKAFHDNRRIRGKKGTIE 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc279244g00001 120 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 9 103 - -
Stsc279244g00001 120 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 80 IPR000504 GO:0003723
Stsc279244g00001 120 MobiDBLite consensus disorder prediction 91 105 - -
Stsc279244g00001 120 SUPERFAMILY RNA-binding domain, RBD 5 95 IPR035979 GO:0003676
Stsc279244g00001 120 SMART rrm1_1 9 82 IPR000504 GO:0003723
Stsc279244g00001 120 Gene3D - 2 117 IPR012677 -
Stsc279244g00001 120 MobiDBLite consensus disorder prediction 91 120 - -
Stsc279244g00001 120 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Stsc279244g00001 120 CDD RRM_SF 10 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc279244g00001 Stsc-Chr279244 246 606 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc279244g00001 4 81 Eukaryotic Initiation Factors Gene Family AT2G36660 29.487 2.93e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc279244g00001 - K21123 ahf:112794598 67.781