Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc278g00007 ATGGCCACTGAAATCGTTTCTGGAAATAGGAATTCGTCGAAGAGGCGCAGGTGCGGAAGTGATTCTTTGGAGGACACTCTTGAGAAGTGGAAGAAGAAGAATTATAAGATTCAACATACTTTTTCCCCAAATGGGGTGCAAGTGATTCACAAAGTTCCTGCAAAAGGGTCCAAGAAAGGGTGCATGAAAGGTAAAGGAGGGCCTCAGAACTCTGAGTTTAGGTACAGAGGTGTGAGGCAGAGGATTTGGGGTAAGTGGGTTGCCGAAATTCGCGAACCGATCAGCAACCATGAGTGCAAGAAGAATGCAAAGAGGCTTTGGCTTGGCACTTTCACCACTGCATTTGAGGCTGCTCTTGCTTATGACAAAGCAGCTAAGACAATGTACGGTTCGGGTGCACGTTTGAACTTTCCGGAGCATGATTTGGAGTTAGTAGGCTCTGAAGAATCATCAAGTAAGAATGGAATTATATTGAGTAATGGTGAGGCTCTTAAAACTGAGGATTTGGATGGTAATTTTCATCAGTTTCGTGAAGACAAACCGAATCTTTCTGATGTTGGAGCATTGGAGGGAACAAAGGAAGAAGAACAAGATGTGCAAACTGAGAAATTCCAAGATCAAAAAATTGAGACACATGATGATGAAAGTGCTGTTCTTAAGGAAATGAAGGATATTGAACCTGAAATACCCGGAGTAAGTGAAGGAATCGAAGGAGAATCGGAAGAGGTTTTCAAGTGTTCTGGCTCTGGTGTTGAGTTTATTGATATGGCAATGAACTCTGGAGCTGATGGCGCGGCTTCTGATGCCAACGAGCATGAGATCGTGGCGAAAAATATAGAAGAAACAACGGAAGAATCGACCGGAAGTTTAACATCATGTGATTTGAGCAATATTGACAACTATTGTGATGATTCCTTAAGCAATCAGATATCAGATGAGGATTGCAATCCCAAACCCAAATATGATCAGTCTAACATAAAAAATGAGGCACATATGGTGAAGAAGAGACACATGGAGAAAGTAATTTCTGAAATTCTAAGACTTTATAGCAACAAGTGCTCAAATAACTATATTCACTCTCAAAATGAGAATCATGAAGATAAGGAACCTTCTGTTCATGTTAAAGATGAGAAGCCATTAATGTCAATAGAAGCTGACAAGCTACAATCTTGCTACTGCTACGGCTGCGATAATAGCGATGATGAAATTAAAAATGAGCCTAACGTTTCAGATGACAATGTTGGAGAAATGTGTGAGTTTGAGGCTTCGAACATCAACATCAATAGAAAGCTTGAATTGCAAGAACAAAAAGATGATGGAAATGTGTTATCTGAATTCAGTTCCATGCAGAATAGGAAGCTATGTGAACATCTGAATAAAATGCAGGTTGCTAGCATAGAAATGGATCATGATTATAGTTTCTTGAGACCTGACTATGATTTTGGGTTAGTAGAAGAGCAGAAATTACTTGATTTATGCTTTTCACATTTAGGATCTTAG 1500 0.398 MATEIVSGNRNSSKRRRCGSDSLEDTLEKWKKKNYKIQHTFSPNGVQVIHKVPAKGSKKGCMKGKGGPQNSEFRYRGVRQRIWGKWVAEIREPISNHECKKNAKRLWLGTFTTAFEAALAYDKAAKTMYGSGARLNFPEHDLELVGSEESSSKNGIILSNGEALKTEDLDGNFHQFREDKPNLSDVGALEGTKEEEQDVQTEKFQDQKIETHDDESAVLKEMKDIEPEIPGVSEGIEGESEEVFKCSGSGVEFIDMAMNSGADGAASDANEHEIVAKNIEETTEESTGSLTSCDLSNIDNYCDDSLSNQISDEDCNPKPKYDQSNIKNEAHMVKKRHMEKVISEILRLYSNKCSNNYIHSQNENHEDKEPSVHVKDEKPLMSIEADKLQSCYCYGCDNSDDEIKNEPNVSDDNVGEMCEFEASNININRKLELQEQKDDGNVLSEFSSMQNRKLCEHLNKMQVASIEMDHDYSFLRPDYDFGLVEEQKLLDLCFSHLGS 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc278g00007 499 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 11 386 - -
Stsc278g00007 499 Gene3D AP2/ERF domain 74 139 IPR036955 GO:0003700|GO:0006355
Stsc278g00007 499 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700|GO:0006355
Stsc278g00007 499 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Stsc278g00007 499 MobiDBLite consensus disorder prediction 1 23 - -
Stsc278g00007 499 FunFam Ethylene-responsive transcription factor 2 74 139 - -
Stsc278g00007 499 ProSiteProfiles AP2/ERF domain profile. 74 138 IPR001471 GO:0003700|GO:0006355
Stsc278g00007 499 SMART rav1_2 74 144 IPR001471 GO:0003700|GO:0006355
Stsc278g00007 499 SUPERFAMILY DNA-binding domain 74 138 IPR016177 GO:0003677
Stsc278g00007 499 CDD AP2 74 140 IPR001471 GO:0003700|GO:0006355
Stsc278g00007 499 Pfam AP2 domain 74 130 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc278g00007 Stsc-Chr278 30689 32732 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc278g00007 14 139 AP2-EREBP Transcription Factor Family AT2G40340 53.125 5.38e-38 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc278g00007 AP2 7.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc278g00007 - - aip:107625804 801.201