Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc278344g00001 ATGCCTAGGGGTTGTGGTTGTTTTCGAAGGGCCTTGTGGCCAATGATGCTATTACCCTATGTAATCCTCATTACGGGGCTTCTACTTCTATACATAGGAAGTGGATATAAACACTCTAATAATCTTTCTGAATTCATCATGGGTCTCGGTATCTTTATGCTTTTGGCTTTCCTCTTTTCATTCACTAAATTTGAGAGCCTTTCGCGTGCGTATTTGAGGGACAACTCCGACGGGAATAATTCTATTGACATCACAAGAAATTTACGAGTGGTTCCTTGGTTGGATAGTGATGAGAATCTTATGATAACGATTGAAGTAGTTAACCGAACAACACAAGAACAATCAACAGAGTGGCCTTTTAGCCGGAGTGCGCGGGTTGCGAGGCTCGCTTTGAGGGCATTGCCACCGTCGAAGAGTTTCAAGGGGAAGAAGGAGGAAGAGGAGGGGAACAATGAATGGGGTTGTTCTATTTGCTTGGAAGAGTTTAAGAATGGGGAATTGATTCAACCTTTGGGAGTGTGTGTTCATGAGTTCCATTCGGATT 544 0.4338 MPRGCGCFRRALWPMMLLPYVILITGLLLLYIGSGYKHSNNLSEFIMGLGIFMLLAFLFSFTKFESLSRAYLRDNSDGNNSIDITRNLRVVPWLDSDENLMITIEVVNRTTQEQSTEWPFSRSARVARLALRALPPSKSFKGKKEEEEGNNEWGCSICLEEFKNGELIQPLGVCVHEFHSD 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc278344g00001 181 Pfam RING-like zinc finger 155 181 IPR001841 -
Stsc278344g00001 181 SUPERFAMILY RING/U-box 144 180 - -
Stsc278344g00001 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 181 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc278344g00001 Stsc-Chr278344 226 769 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc278344g00001 47 181 C3H Transcription Factor Family AT2G27940 31.206 4.23e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc278344g00001 - - ahf:112718325 145.206