Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc277629g00001 ATGACTAAAAGGTTCAACACTATACTAGGAAGTGGAGGCTATGGCTCTGTCTTCCAAGGAAAGCTTCGAAGTGGTCGTCTTGTAGCTGTTAAGGTATTGAATAAGGCCAAATCCAATGGTCAGGAATTCATCAATGAAGTTGCTACTATTGGAAGAATTCACCATGTTAATGTGGTCCAACTCATTGGTTTCTGTGTGGAGGGATCAAAGCGTGCTTTGATATATGAGTTAATGCAAAATG 241 0.4025 MTKRFNTILGSGGYGSVFQGKLRSGRLVAVKVLNKAKSNGQEFINEVATIGRIHHVNVVQLIGFCVEGSKRALIYELMQN 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc277629g00001 80 Gene3D Phosphorylase Kinase; domain 1 1 77 - -
Stsc277629g00001 80 Pfam Protein tyrosine and serine/threonine kinase 5 79 IPR001245 GO:0004672|GO:0006468
Stsc277629g00001 80 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Stsc277629g00001 80 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 80 IPR045874 GO:0004672
Stsc277629g00001 80 FunFam serine/threonine-protein kinase PBS1-like 1 77 - -
Stsc277629g00001 80 ProSiteProfiles Protein kinase domain profile. 3 80 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc277629g00001 80 SUPERFAMILY Protein kinase-like (PK-like) 7 80 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc277629g00001 Stsc-Chr277629 227 467 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc277629g00001 1 80 Receptor kinase-like Gene Family AT1G66980 57.500 2.01e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc277629g00001 PK_Tyr_Ser-Thr 4.9e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc277629g00001 - - aip:107607706 145.591