Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2773g00001 ATGGGAAGGTGTCTACGCTGCTGCGGAGATGAAAGTAGTGGTGGTGTCAAGAAAGGTCCATGGACTCCTGAAGAAGATCAAAAGCTTCTTCACCACATTCACAAACATGGCCATAGAAATTGGAGGCTTCTCCCTAAGCTAGCCGGTCTTAATAGATGTGGTAAGAGCTGCAGGCTTAGATGGATCAACTATTTGAGGCCTGGTATCAAGAGGGAAAAGTTCTCTCAAGAAGAGGAGCAAACCATTCTCCATCTTCATTCAATTCTTGGAAACAAATGGTCAACAATTGCATCTTATCTTCCATGGAGGACTGATAATGATATAAAGAATTTCTGGAACACTCGATTAAAGAAGAAGCTTATTCAAATGGGTATTGATCCAGTGACTCATCAGCCAGTGATTATAGATCATTACTCAATGGTTGAACACGCTCTGAGGTTACAACAAGAATTAGAAGCTCAGCTGGCAAATCTTCGATACCTTCAAATTCAATACTTATCTACTATATCCTCATATGATGATAACCTAAATGGCAGCATCATCACAAACATGGAACCTTTCGGTTTGTTGAACTCCATCTCTACCATCTCTAATGAGAACCACAACCCAGTTATACACTTTCCACAACTGGACAGTAATAATAATCACAATTATGCCTCGTTTTCTGATGGGATCATTGGTGAGAGCTCTCATTTTTTTGACTTATCACAAGAACGTGAAGGTGGTACTACTATTAATAATGATAATTCCTCGTGGATTATTCCGCCTACTTCTCCATCTATTGCTCCAGATGATGATGTGAATTGA 807 0.3978 MGRCLRCCGDESSGGVKKGPWTPEEDQKLLHHIHKHGHRNWRLLPKLAGLNRCGKSCRLRWINYLRPGIKREKFSQEEEQTILHLHSILGNKWSTIASYLPWRTDNDIKNFWNTRLKKKLIQMGIDPVTHQPVIIDHYSMVEHALRLQQELEAQLANLRYLQIQYLSTISSYDDNLNGSIITNMEPFGLLNSISTISNENHNPVIHFPQLDSNNNHNYASFSDGIIGESSHFFDLSQEREGGTTINNDNSSWIIPPTSPSIAPDDDVN 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2773g00001 268 CDD SANT 73 116 IPR001005 -
Stsc2773g00001 268 FunFam MYB transcription factor 72 133 - -
Stsc2773g00001 268 CDD SANT 20 65 IPR001005 -
Stsc2773g00001 268 FunFam MYB-related transcription factor 17 70 - -
Stsc2773g00001 268 Pfam Myb-like DNA-binding domain 71 114 IPR001005 -
Stsc2773g00001 268 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
Stsc2773g00001 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 69 IPR017930 -
Stsc2773g00001 268 Gene3D - 73 120 - -
Stsc2773g00001 268 SMART sant 17 67 IPR001005 -
Stsc2773g00001 268 SMART sant 70 118 IPR001005 -
Stsc2773g00001 268 SUPERFAMILY Homeodomain-like 15 112 IPR009057 -
Stsc2773g00001 268 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Stsc2773g00001 268 Gene3D - 17 70 - -
Stsc2773g00001 268 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Stsc2773g00001 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 120 IPR017930 -
Stsc2773g00001 268 MobiDBLite consensus disorder prediction 244 268 - -
Stsc2773g00001 268 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 6 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2773g00001 Stsc-Chr2773 3945 4944 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2773g00001 1 226 MYB Transcription Factor Family AT1G34670 55.061 3.36e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc2773g00001 Myb_DNA-binding 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2773g00001 K09422 - gmx:100811162 253.832