Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc277298g00001 ATCCAGCTGTCTTCGCCGAGCAAACCACCAAAGACAAGTTCAGATGAAGAAGCCTTCAAGCTTCCCCAAAAGTATGAGATTTTGGGCGAGTATTTTGCTAGGTTGGATTGTTCGATTCGATTGCTGCGGAGGAAAGGAATGATGCCGTCTTTCGCGAAAATCAGCCACACCATTGAAAGTTTAACTGATAGGAGGTTTACACTTGGTCATTTGGCTCAGTTGAAATTTTTGTTGCCTGAGGCAATTGTGACTAAGAAAGTGATGATGTTTGATGAGAGGACAAGTTGTATGAAGCCAGATCTGCATGTCACTGTTAACTATGATGTGGTGGAGTATGATGCAAAGTCGCCAACCGAAGACGGCCAGAGCATGGTTTTGAGGAAGTTGTTCCGTGCGCGGCTGAGAGATTTTGTTGAATCCCATCCTGAGCCATTCAACCCAAAGCAACATCATCTATCAGACATATTGAAAAGGCCTTTCTCATCTAAGGAGATAAAATCATCAGTAGTCATTCGGGATAATGACACTAAAATAGAGTTGTCAGAACCAGTCAGAGCATCAATTGATCCCCTTAACCATCAACCATCAGTAGCCTCTCATGTACCTCGATCTTTCACAAGAAGGTTTTCTCAGATGAAGGAAAATGGGACAAATAATGACGCACAGGAAAAATTTCCATCAGATTCATTCCAAACTGTGGTTCTACCGGATTCAGAGTCAAACCTAAGTGGAAAACCGACCTCAGAAGGAGCCAGCAATGAAGTAGGCCTAACAAATTGTTCTTCATCTGGTGCTCCACCTGCTACTCCATGCAAAACCATTGAACATGCAGAAAATAATGATGGGTCTCAAAAAAGCTTTGGTGCTGTGTCAACCCCAGATGTTAAATGTATTTCTACTCCAGCCAGCATAACACCGACATTGCCTGCACCTAAGAGACATTTCATGAGTCCAGATGATAACTCTTCCACCACTACTAGCAAGTTGGTTAGGCGTCCACCTCTATCAAG 1010 0.4327 IQLSSPSKPPKTSSDEEAFKLPQKYEILGEYFARLDCSIRLLRRKGMMPSFAKISHTIESLTDRRFTLGHLAQLKFLLPEAIVTKKVMMFDERTSCMKPDLHVTVNYDVVEYDAKSPTEDGQSMVLRKLFRARLRDFVESHPEPFNPKQHHLSDILKRPFSSKEIKSSVVIRDNDTKIELSEPVRASIDPLNHQPSVASHVPRSFTRRFSQMKENGTNNDAQEKFPSDSFQTVVLPDSESNLSGKPTSEGASNEVGLTNCSSSGAPPATPCKTIEHAENNDGSQKSFGAVSTPDVKCISTPASITPTLPAPKRHFMSPDDNSSTTTSKLVRRPPLS 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc277298g00001 336 SMART CDT1_2 21 154 IPR014939 -
Stsc277298g00001 336 MobiDBLite consensus disorder prediction 317 336 - -
Stsc277298g00001 336 MobiDBLite consensus disorder prediction 236 268 - -
Stsc277298g00001 336 SUPERFAMILY "Winged helix" DNA-binding domain 18 145 IPR036390 -
Stsc277298g00001 336 CDD Cdt1_m 4 183 IPR014939 -
Stsc277298g00001 336 MobiDBLite consensus disorder prediction 276 290 - -
Stsc277298g00001 336 MobiDBLite consensus disorder prediction 236 336 - -
Stsc277298g00001 336 PANTHER DNA REPLICATION FACTOR CDT1 10 327 IPR045173 GO:0003677|GO:0030174|GO:0071163
Stsc277298g00001 336 Pfam DNA replication factor CDT1 like 21 141 IPR014939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc277298g00001 Stsc-Chr277298 12 1654 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc277298g00001 15 143 Core DNA Replication Machinery Family AT2G31270 55.039 1.01e-40 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc277298g00001 K10727 - gmx:100778818 248.44