Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc277222g00001 GTGAATGCTGCAAACTTCATGGCGAAGAACATTGGATTCGAGAACACAGCAGGCCCAGAAAAGCACCAAGCAGTGGCACTCAGAATCACAGCAGACCAAGCCGTGATCTACAACTGCCACATGGAAGGTTTCCAAGACACACTCTACGTCCAATCCCAACGCCAATTATTCCGTGACTGCACCATCACAGGCACCGTTGACTTCATCTTTGGGGACGCAGTTGGAGTCTTCCAAAACTGTAAGCTCCTTGTCAAGAAGCCCATGTCTAACCAACAATGCATGGTCACAGCCGGTGGAAGAACCAAAGTTGACAGCCCAACTGCCCTTGTTTTCCAGAGCTGCTACTTCATTGGGGAGCCTCAACTTGCAAGCTTGAACCCCAAGATTGCTTACTTGGGTCGCCCATGGAGGACTTACTCCAAGGTGGTTATCATGGACTCCATCATTGATGATATCATTGTGCCTGAAGGGTACATGCCATGGATGGGAAGTGCATACAAGGACACGTGTACTTATTATGAGTATAACAATAAGGGACCCGGTGCTGATACCTCAAAGAGGGTTAAGTGGCCTGGGTTTAAGGTCTTGGATGCTCCTGAAGCTGCTAATTATTATCCAGGAAAATTCTATGAGCTTTCTAACTCTACTGATCGTGATGGTTGGATCATTGACTCTGGTGTTCCTTATAATCTTGATGCCTTCCCTGCCTCCACTTCCGCCGGCGTTGCACCTATAACTATTAATATCGCCCCTACTACCGCTACTACCTCGACTACTACTGCTGCTGCCAGCGCTACTACCGCAACTACTGCTGCTGCTGCCGGCGCTACTACCACTACTTCTACTGCTGCTACTACTGCTGCTGGGGGCGGCCGCTCCTGCTGTTTCCGCAGCCACAAAGAAGTCAGCGAG 912 0.4978 VNAANFMAKNIGFENTAGPEKHQAVALRITADQAVIYNCHMEGFQDTLYVQSQRQLFRDCTITGTVDFIFGDAVGVFQNCKLLVKKPMSNQQCMVTAGGRTKVDSPTALVFQSCYFIGEPQLASLNPKIAYLGRPWRTYSKVVIMDSIIDDIIVPEGYMPWMGSAYKDTCTYYEYNNKGPGADTSKRVKWPGFKVLDAPEAANYYPGKFYELSNSTDRDGWIIDSGVPYNLDAFPASTSAGVAPITINIAPTTATTSTTTAAASATTATTAAAAGATTTTSTAATTAAGGGRSCCFRSHKEVSE 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc277222g00001 304 SUPERFAMILY Pectin lyase-like 1 221 IPR011050 -
Stsc277222g00001 304 PANTHER PECTINESTERASE 1 222 - -
Stsc277222g00001 304 FunFam Pectinesterase 4 1 233 - -
Stsc277222g00001 304 Pfam Pectinesterase 2 209 IPR000070 GO:0030599|GO:0042545
Stsc277222g00001 304 ProSitePatterns Pectinesterase signature 2. 62 71 IPR033131 -
Stsc277222g00001 304 Gene3D - 1 235 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc277222g00001 Stsc-Chr277222 695 1608 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc277222g00001 1 229 Carbohydrate Esterase AT5G49180 52.586 1.36e-86 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc277222g00001 K01051 - gmx:100800194 386.726